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SAMD00160738
microbial community in surface soil collected at N-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
30,866
Reads
1,366
Observed features
6.771
Shannon
0.938
Evenness
1,366
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194919
Per-run QC
- 16S identity
- 81.1%
- Q30
- 91.8%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_1 · Bradyrhizobium 445 (1.4%)
- ASV_33334 · Rhizobacter 107 (0.3%)
- ASV_34773 · Incertae Sedis 134 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 28.1%
- Actinomycetota 19.0%
- Acidobacteriota 15.7%
- Planctomycetota 11.5%
- Verrucomicrobiota 5.3%
- Chloroflexota 4.7%
- Bacteroidota 3.7%
- everything else 12.0%
- Alphaproteobacteria 18.2%
- Gammaproteobacteria 9.9%
- Planctomycetes 9.8%
- Thermoleophilia 9.1%
- Acidobacteriae 8.1%
- Actinobacteria 6.9%
- Vicinamibacteria 5.6%
- everything else 32.4%
- Hyphomicrobiales 11.2%
- Incertae Sedis 7.4%
- Burkholderiales 5.9%
- Gaiellales 5.6%
- Vicinamibacterales 5.5%
- Gemmatales 3.8%
- Solirubrobacterales 3.5%
- everything else 57.1%
- Incertae Sedis 30.0%
- Xanthobacteraceae 8.1%
- Gemmataceae 3.8%
- Isosphaeraceae 2.6%
- Chthoniobacteraceae 2.3%
- Chitinophagaceae 2.2%
- Nitrosomonadaceae 2.1%
- everything else 48.9%
- Incertae Sedis 57.6%
- Bradyrhizobium 2.5%
- Acidothermus 2.0%
- Candidatus Udaeobacter 1.8%
- Candidatus Solibacter 1.6%
- Pseudolabrys 1.5%
- Acidibacter 1.3%
- everything else 31.6%
- uncultured bacterium 67.5%
- uncultured Acidobacteria bacterium 4.0%
- metagenome 2.8%
- Bradyrhizobium elkanii 2.1%
- uncultured forest soil bacterium 1.6%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured planctomycete 1.1%
- everything else 19.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.