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SAMD00160736
microbial community in surface soil collected at N-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
30,913
Reads
1,357
Observed features
6.765
Shannon
0.938
Evenness
1,357
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194917
Per-run QC
- 16S identity
- 84.9%
- Q30
- 92.3%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 478 (1.5%)
- ASV_33334 · Rhizobacter 93 (0.3%)
- ASV_34773 · Incertae Sedis 99 (0.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 29.6%
- Actinomycetota 19.9%
- Acidobacteriota 15.9%
- Planctomycetota 9.2%
- Verrucomicrobiota 5.3%
- Bacteroidota 4.3%
- Chloroflexota 4.2%
- everything else 11.6%
- Alphaproteobacteria 19.1%
- Gammaproteobacteria 10.5%
- Thermoleophilia 9.5%
- Acidobacteriae 8.8%
- Planctomycetes 7.8%
- Actinobacteria 7.4%
- Verrucomicrobiia 5.3%
- everything else 31.5%
- Hyphomicrobiales 11.3%
- Burkholderiales 6.6%
- Incertae Sedis 6.5%
- Gaiellales 6.4%
- Vicinamibacterales 4.8%
- Terriglobales 3.4%
- Gemmatales 3.3%
- everything else 57.7%
- Incertae Sedis 29.2%
- Xanthobacteraceae 8.1%
- Gemmataceae 3.3%
- Nitrosomonadaceae 2.6%
- Acidothermaceae 2.5%
- Chitinophagaceae 2.3%
- Chthoniobacteraceae 2.2%
- everything else 49.8%
- Incertae Sedis 55.3%
- Bradyrhizobium 2.8%
- Acidothermus 2.5%
- Candidatus Solibacter 1.8%
- Pseudolabrys 1.6%
- Candidatus Udaeobacter 1.6%
- Bryobacter 1.3%
- everything else 33.3%
- uncultured bacterium 65.1%
- uncultured Acidobacteria bacterium 4.3%
- metagenome 3.3%
- Bradyrhizobium elkanii 2.3%
- uncultured forest soil bacterium 1.9%
- uncultured Alphaproteobacteria bacterium 1.6%
- uncultured proteobacterium 1.2%
- everything else 20.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.