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SAMEA1712415
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4-V5
- present
- 0.1
derived from this sample's metadata and per-run QC
1,544
Reads
72
Observed features
3.785
Shannon
0.885
Evenness
72
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198660
Per-run QC
- 16S identity
- 92.2%
- Q30
- 66.9%
- Region
- V4-V5
- Read length
- 354 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 49.2%
- Actinomycetota 20.2%
- Bacteroidota 11.5%
- Pseudomonadota 11.4%
- Chloroflexota 2.6%
- Acidobacteriota 1.8%
- Gemmatimonadota 1.6%
- everything else 1.8%
- Bacilli 37.2%
- Actinobacteria 12.9%
- Clostridia 11.9%
- Bacteroidia 11.5%
- Alphaproteobacteria 8.8%
- Thermoleophilia 4.8%
- Gammaproteobacteria 2.6%
- everything else 10.3%
- Bacillales 30.3%
- Clostridiales 8.7%
- Chitinophagales 7.5%
- Frankiales 6.1%
- Hyphomicrobiales 6.0%
- Paenibacillales 5.3%
- Propionibacteriales 5.3%
- everything else 30.8%
- Bacillaceae 30.3%
- Chitinophagaceae 7.5%
- Incertae Sedis 6.7%
- Beijerinckiaceae 6.0%
- Paenibacillaceae 5.3%
- Clostridiaceae 4.4%
- Nocardioidaceae 4.0%
- everything else 35.7%
- Neobacillus 20.1%
- Incertae Sedis 17.9%
- Microvirga 6.0%
- Clostridium 4.4%
- Nocardioides 4.0%
- Mesobacillus 3.9%
- Ammoniphilus 3.7%
- everything else 40.0%
- uncultured bacterium 50.4%
- Bacillus sp. (in: Bacteria) 24.0%
- Marmoricola sp. 3.6%
- uncultured Blastococcus sp. 3.5%
- Bacillus massiliosenegalensis 2.7%
- Bacillus endophyticus 1.8%
- Bacillus benzoevorans 1.8%
- everything else 12.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 54% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.