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SAMEA1712412
Nanoparticle effects on soil microbial community
- 1 run(s)
- 454 GS FLX
- V4-V5
- present
- 0.1
derived from this sample's metadata and per-run QC
1,977
Reads
96
Observed features
4.039
Shannon
0.885
Evenness
96
Chao1
Where and when
- Collected
- 2011-06
- Depth
- 0.1
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 31.98333, 34.81667
- Platforms
- 454 GS FLX
Runs
ERR198667
Per-run QC
- 16S identity
- 77.4%
- Q30
- 63.2%
- Region
- V4-V5
- Read length
- 362 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_2167 · Sporosarcina 176 (8.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Bacillota 32.5%
- Actinomycetota 20.3%
- Pseudomonadota 20.2%
- Bacteroidota 17.6%
- Chloroflexota 3.8%
- Gemmatimonadota 3.2%
- Acidobacteriota 1.2%
- everything else 1.2%
- Bacilli 25.6%
- Bacteroidia 17.6%
- Actinobacteria 12.7%
- Alphaproteobacteria 12.4%
- Gammaproteobacteria 7.8%
- Clostridia 6.5%
- Thermoleophilia 4.3%
- everything else 13.1%
- Bacillales 21.0%
- Chitinophagales 9.2%
- Hyphomicrobiales 8.2%
- Burkholderiales 6.3%
- Clostridiales 5.3%
- Propionibacteriales 5.3%
- Paenibacillales 4.5%
- everything else 40.4%
- Planococcaceae 14.5%
- Chitinophagaceae 8.8%
- Beijerinckiaceae 7.0%
- Bacillaceae 6.5%
- Paenibacillaceae 4.5%
- Oxalobacteraceae 4.3%
- Nocardioidaceae 4.2%
- everything else 50.2%
- Incertae Sedis 13.0%
- Sporosarcina 8.9%
- Flavisolibacter 6.8%
- Microvirga 6.4%
- Lysinibacillus 5.6%
- Nocardioides 4.2%
- Daejeonella 3.8%
- everything else 51.3%
- uncultured bacterium 51.8%
- Sporosarcina sp. 8.9%
- Bacillus sp. CA-11 5.6%
- Bacillus sp. (in: Bacteria) 4.8%
- uncultured Bacteroidetes bacterium 2.4%
- uncultured Chloroflexi bacterium 2.3%
- Marmoricola sp. 2.3%
- everything else 21.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 65% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- composition 53% similar (genus)
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
- same collection date
- shared: 0.1, 454 GS FLX
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB3386-20260926/.