opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN05560347
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
16,092
Reads
43
Observed features
1.371
Shannon
0.365
Evenness
43
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036697
Per-run QC
- 16S identity
- 52.2%
- Q30
- 69.4%
- Region
- V3-V4
- Read length
- 465 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Paracandidimonas 11,760 (73.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 88.9%
- Bacteroidota 6.1%
- Acidobacteriota 2.1%
- Actinomycetota 1.6%
- Chloroflexota 0.7%
- Bacillota 0.4%
- Ignavibacteriota 0.2%
- Gammaproteobacteria 86.7%
- Bacteroidia 6.1%
- Alphaproteobacteria 2.2%
- Holophagae 1.6%
- Actinobacteria 1.6%
- Bacilli 0.3%
- OLB14 0.3%
- everything else 1.2%
- Burkholderiales 81.0%
- Chitinophagales 6.0%
- Lysobacterales 4.5%
- Holophagales 1.6%
- Frankiales 1.3%
- Hyphomicrobiales 1.2%
- Enterobacterales 0.8%
- everything else 3.6%
- Alcaligenaceae 73.6%
- Comamonadaceae 6.4%
- Chitinophagaceae 6.0%
- Rhodanobacteraceae 3.8%
- Incertae Sedis 2.3%
- Holophagaceae 1.6%
- Lysobacteraceae 0.8%
- everything else 5.7%
- Paracandidimonas 73.4%
- Incertae Sedis 6.8%
- Acidovorax 6.0%
- Rhodanobacter 3.8%
- Nemorincola 3.0%
- Thermomonas 0.8%
- Bradyrhizobium 0.7%
- everything else 5.6%
- Castellaniella sp. BAB-4050 73.4%
- uncultured bacterium 14.3%
- uncultured Acidovorax sp. 3.5%
- uncultured Chitinophaga sp. 2.8%
- Thermomonas sp. lyso-lm521 0.8%
- Bradyrhizobium elkanii 0.7%
- Escherichia coli 0.7%
- everything else 4.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 84% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 69% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.