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SAMN05560360
Metagenome or environmental sample from sediment metagenome
- 1 run(s)
- 454 GS FLX Titanium
- V3-V4
- present
derived from this sample's metadata and per-run QC
12,987
Reads
83
Observed features
2.549
Shannon
0.577
Evenness
83
Chao1
Where and when
- Collected
- 2012-10-03
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 36.34, -87.03
- Platforms
- 454 GS FLX Titanium
Runs
SRR4036696
Per-run QC
- 16S identity
- 50.7%
- Q30
- 71.5%
- Region
- V3-V4
- Read length
- 460 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_2133 · Paracandidimonas 6,102 (47.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 79.0%
- Bacillota 10.8%
- Actinomycetota 2.5%
- Bacteroidota 2.1%
- Acidobacteriota 1.1%
- Ignavibacteriota 1.1%
- Dependentiae 0.6%
- everything else 2.8%
- Gammaproteobacteria 73.6%
- Clostridia 7.4%
- Alphaproteobacteria 5.4%
- Bacilli 2.5%
- Bacteroidia 2.1%
- Actinobacteria 1.8%
- Ignavibacteria 1.1%
- everything else 6.1%
- Burkholderiales 59.0%
- Lysobacterales 12.8%
- Clostridiales 5.5%
- Hyphomicrobiales 2.6%
- Sphingomonadales 1.9%
- Chitinophagales 1.6%
- Bacillales 1.5%
- everything else 14.9%
- Alcaligenaceae 47.0%
- Rhodanobacteraceae 11.7%
- Comamonadaceae 10.4%
- Clostridiaceae 5.5%
- Incertae Sedis 2.4%
- Sphingomonadaceae 1.9%
- Chitinophagaceae 1.6%
- everything else 19.6%
- Paracandidimonas 47.0%
- Luteibacter 11.7%
- Acidovorax 9.3%
- Incertae Sedis 7.4%
- Clostridium 4.0%
- Sarcina 1.5%
- Thermomonas 1.2%
- everything else 17.9%
- Castellaniella sp. BAB-4050 47.0%
- Luteibacter sp. 4cultural_55 11.7%
- uncultured bacterium 10.4%
- uncultured Acidovorax sp. 9.3%
- metagenome 2.4%
- Clostridium amylolyticum 1.6%
- uncultured Chitinophaga sp. 1.3%
- everything else 16.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 72% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- composition 69% similar (genus)
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
- same collection date
- shared: 454 GS FLX Titanium, V3-V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA338649-20260926/.