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SAMN06704772
Cd_contaminated_sediment_5
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
8,479
Reads
367
Observed features
5.458
Shannon
0.924
Evenness
367
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.36, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435141
Per-run QC
- 16S identity
- 97.1%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_21711 · RBG-16-58-14 220 (2.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.9%
- Archaea 2.1%
- Chloroflexota 28.4%
- Pseudomonadota 23.6%
- Acidobacteriota 8.2%
- Cyanobacteriota 7.0%
- Bacteroidota 6.6%
- Actinomycetota 4.1%
- Verrucomicrobiota 3.9%
- everything else 18.2%
- Anaerolineae 24.7%
- Gammaproteobacteria 21.0%
- Cyanobacteriia 6.9%
- Bacteroidia 6.6%
- Vicinamibacteria 5.2%
- Actinobacteria 3.3%
- Verrucomicrobiia 3.1%
- everything else 29.2%
- Anaerolineales 22.8%
- Burkholderiales 15.4%
- Incertae Sedis 8.1%
- Chloroplast 4.4%
- Vicinamibacterales 3.4%
- Bacteroidales 2.4%
- Pseudomonadales 2.3%
- everything else 41.4%
- Anaerolineaceae 22.8%
- Incertae Sedis 22.1%
- Comamonadaceae 5.6%
- Rhodocyclaceae 2.9%
- Hydrogenophilaceae 2.5%
- Pedosphaeraceae 2.1%
- Sulfurimonadaceae 1.9%
- everything else 40.2%
- Incertae Sedis 50.2%
- RBG-16-58-14 5.9%
- Polaromonas 2.5%
- Sulfuricurvum 1.9%
- Thiobacillus 1.7%
- Rhizobacter 1.5%
- Pseudomonas 1.2%
- everything else 35.1%
- uncultured bacterium 55.1%
- uncultured prokaryote 5.9%
- uncultured soil bacterium 4.9%
- metagenome 4.9%
- uncultured Chloroflexi bacterium 3.7%
- Polaromonas sp. 1.5%
- Chaetosphaeridium globosum 1.5%
- everything else 22.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 85% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 84% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 84% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 83% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.