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SAMN06704752
Cd_contaminated_upland_soil_5
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
27,017
Reads
641
Observed features
5.842
Shannon
0.904
Evenness
641
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.16, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435161
Per-run QC
- 16S identity
- 98.9%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Chloroflexota 46.2%
- Pseudomonadota 12.2%
- Actinomycetota 11.5%
- Acidobacteriota 7.5%
- Gemmatimonadota 3.4%
- Planctomycetota 3.3%
- Bacillota 3.0%
- everything else 12.8%
- Ktedonobacteria 26.4%
- AD3 9.5%
- Anaerolineae 7.4%
- Actinobacteria 7.2%
- Alphaproteobacteria 7.0%
- Acidobacteriae 6.0%
- Gammaproteobacteria 5.3%
- everything else 31.2%
- Ktedonobacterales 25.3%
- Incertae Sedis 18.1%
- RBG-13-54-9 5.8%
- Frankiales 5.5%
- Gemmatimonadales 3.1%
- Hyphomicrobiales 2.8%
- Solirubrobacterales 2.8%
- everything else 36.6%
- Incertae Sedis 40.9%
- Ktedonobacteraceae 23.1%
- Acidothermaceae 4.9%
- Gemmatimonadaceae 3.1%
- Solirubrobacteraceae 2.6%
- Xanthobacteraceae 2.3%
- Unknown Family 1.7%
- everything else 21.4%
- Incertae Sedis 54.4%
- HSB OF53-F07 15.8%
- Acidothermus 4.9%
- Conexibacter 2.1%
- JG30a-KF-32 1.9%
- 1921-2 1.9%
- Candidatus Solibacter 1.7%
- everything else 17.4%
- uncultured bacterium 64.7%
- uncultured Ktedonobacter sp. 7.6%
- uncultured soil bacterium 5.4%
- uncultured forest soil bacterium 2.9%
- uncultured Chloroflexi bacterium 2.0%
- uncultured Anaerolineaceae bacterium 1.9%
- uncultured gamma proteobacterium 1.5%
- everything else 14.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 83% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 81% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.