opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219845
Moderate-contaminated-sample8
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- moderate
derived from this sample's metadata and per-run QC
37,041
Reads
882
Observed features
6.08
Shannon
0.896
Evenness
882
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.29, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171660
Per-run QC
- 16S identity
- 98.4%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_11112 · Incertae Sedis 1,934 (5.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Chloroflexota 44.3%
- Pseudomonadota 13.6%
- Actinomycetota 12.4%
- Acidobacteriota 10.9%
- Planctomycetota 2.4%
- Gemmatimonadota 2.4%
- Verrucomicrobiota 2.2%
- everything else 11.8%
- Ktedonobacteria 18.9%
- Anaerolineae 17.6%
- Alphaproteobacteria 8.8%
- Actinobacteria 8.0%
- Acidobacteriae 5.9%
- Gammaproteobacteria 4.7%
- Holophagae 4.0%
- everything else 32.0%
- Ktedonobacterales 17.5%
- RBG-13-54-9 13.3%
- Incertae Sedis 11.0%
- Frankiales 5.4%
- Subgroup 7 4.0%
- Hyphomicrobiales 3.4%
- Anaerolineales 3.1%
- everything else 42.3%
- Incertae Sedis 42.5%
- Ktedonobacteraceae 16.0%
- Acidothermaceae 4.2%
- Anaerolineaceae 3.1%
- Xanthobacteraceae 2.7%
- Solirubrobacteraceae 2.5%
- Gemmatimonadaceae 2.0%
- everything else 27.1%
- Incertae Sedis 58.8%
- HSB OF53-F07 11.3%
- Acidothermus 4.2%
- Conexibacter 2.0%
- Candidatus Solibacter 1.9%
- 1921-2 1.5%
- Acidibacter 1.1%
- everything else 19.2%
- uncultured bacterium 65.9%
- uncultured soil bacterium 5.6%
- uncultured Ktedonobacter sp. 5.0%
- uncultured Anaerolineaceae bacterium 1.8%
- uncultured Acidobacteria bacterium 1.4%
- uncultured Caldilineaceae bacterium 1.4%
- uncultured Alphaproteobacteria bacterium 1.4%
- everything else 17.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.