opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219837
Non-contaminated-control10
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- control
derived from this sample's metadata and per-run QC
8,155
Reads
399
Observed features
5.603
Shannon
0.936
Evenness
399
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.21, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171668
Per-run QC
- 16S identity
- 97.6%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.1%
- Archaea 0.9%
- Chloroflexota 26.7%
- Acidobacteriota 25.3%
- Pseudomonadota 12.5%
- Verrucomicrobiota 6.1%
- Planctomycetota 5.8%
- Methylomirabilota 3.3%
- Actinomycetota 3.0%
- everything else 17.4%
- Anaerolineae 21.9%
- Vicinamibacteria 9.5%
- Gammaproteobacteria 8.3%
- Blastocatellia 6.2%
- Verrucomicrobiia 6.1%
- Planctomycetes 4.6%
- Alphaproteobacteria 4.2%
- everything else 39.3%
- Incertae Sedis 13.2%
- Vicinamibacterales 9.0%
- Anaerolineales 8.2%
- Aggregatilineales 6.8%
- RBG-13-54-9 6.7%
- Chthoniobacterales 4.4%
- Burkholderiales 4.3%
- everything else 47.4%
- Incertae Sedis 44.2%
- Anaerolineaceae 8.2%
- Aggregatilineaceae 4.6%
- Chthoniobacteraceae 4.4%
- Gemmataceae 2.5%
- Xanthobacteraceae 1.7%
- Pyrinomonadaceae 1.7%
- everything else 32.8%
- Incertae Sedis 71.6%
- Candidatus Udaeobacter 4.3%
- Sh765B-TzT-35 1.0%
- Rhizobacter 1.0%
- Ellin516 1.0%
- Rhodanobacter 0.9%
- JGI 0001001-H03 0.8%
- everything else 19.4%
- uncultured bacterium 78.4%
- uncultured Acidobacteria bacterium 3.0%
- uncultured Alphaproteobacteria bacterium 1.1%
- uncultured Chloroflexi bacterium 1.1%
- uncultured Comamonadaceae bacterium 1.0%
- uncultured bacterium gp18 1.0%
- uncultured Desulfovirga sp. 0.7%
- everything else 13.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.