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SAMN06704755
Cd_contaminated_upland_soil_8
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
30,870
Reads
786
Observed features
6.108
Shannon
0.916
Evenness
786
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.19, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435158
Per-run QC
- 16S identity
- 97.8%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_11112 · Incertae Sedis 632 (2.0%)
- ASV_20600 · Incertae Sedis 20 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Chloroflexota 52.0%
- Acidobacteriota 11.3%
- Pseudomonadota 11.1%
- Actinomycetota 6.6%
- Patescibacteria 2.8%
- Myxococcota 2.2%
- Gemmatimonadota 2.2%
- everything else 12.0%
- Anaerolineae 32.1%
- AD3 7.6%
- Ktedonobacteria 7.4%
- Alphaproteobacteria 6.6%
- Holophagae 5.5%
- Gammaproteobacteria 4.4%
- Acidobacteriae 4.3%
- everything else 32.1%
- Incertae Sedis 16.9%
- RBG-13-54-9 15.7%
- Anaerolineales 11.6%
- Ktedonobacterales 7.0%
- Subgroup 7 5.5%
- Aggregatilineales 4.3%
- Hyphomicrobiales 3.6%
- everything else 35.4%
- Incertae Sedis 49.9%
- Anaerolineaceae 11.6%
- Ktedonobacteraceae 6.3%
- Aggregatilineaceae 3.9%
- Xanthobacteraceae 2.9%
- Acidothermaceae 1.9%
- Gemmatimonadaceae 1.7%
- everything else 21.9%
- Incertae Sedis 72.3%
- HSB OF53-F07 4.5%
- RBG-16-58-14 2.0%
- Acidothermus 1.9%
- Candidatus Solibacter 1.2%
- Conexibacter 1.0%
- Anaerolinea 0.9%
- everything else 16.1%
- uncultured bacterium 70.2%
- uncultured Bellilinea sp. 4.1%
- uncultured Anaerolineaceae bacterium 3.7%
- uncultured soil bacterium 3.1%
- uncultured Caldilineaceae bacterium 2.0%
- uncultured Chloroflexi bacterium 1.9%
- uncultured Ktedonobacter sp. 1.7%
- everything else 13.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Cd-upland
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.