opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219850
Severely-contaminated-sample3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- severe
derived from this sample's metadata and per-run QC
27,211
Reads
662
Observed features
5.765
Shannon
0.888
Evenness
662
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.34, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171655
Per-run QC
- 16S identity
- 98.4%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_11112 · Incertae Sedis 31 (0.1%)
- ASV_20600 · Incertae Sedis 1,211 (4.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.0%
- Archaea 2.0%
- Chloroflexota 27.2%
- Acidobacteriota 18.7%
- Pseudomonadota 16.1%
- Methylomirabilota 6.3%
- Planctomycetota 6.0%
- Myxococcota 5.5%
- Thermodesulfobacteriota 5.1%
- everything else 15.2%
- Anaerolineae 21.1%
- Gammaproteobacteria 12.7%
- Acidobacteriae 9.3%
- Incertae Sedis 6.7%
- Methylomirabilia 6.3%
- Planctomycetes 5.4%
- KD4-96 4.6%
- everything else 33.7%
- Incertae Sedis 18.9%
- Anaerolineales 12.8%
- Acidiferrobacterales 5.9%
- Burkholderiales 5.9%
- Rokubacteriales 5.0%
- Terriglobales 4.2%
- RBG-13-54-9 4.1%
- everything else 43.1%
- Incertae Sedis 47.4%
- Anaerolineaceae 12.8%
- Acidiferrobacteraceae 5.9%
- Hydrogenophilaceae 2.9%
- Anaeromyxobacteraceae 2.7%
- Aggregatilineaceae 2.0%
- Bryobacteraceae 1.6%
- everything else 24.7%
- Incertae Sedis 68.2%
- Sulfurifustis 4.4%
- Anaeromyxobacter 2.7%
- Thiobacillus 2.0%
- RBG-16-58-14 1.9%
- Candidatus Solibacter 1.5%
- Bryobacter 1.5%
- everything else 17.9%
- uncultured bacterium 75.3%
- uncultured Chloroflexi bacterium 3.4%
- uncultured soil bacterium 2.5%
- uncultured proteobacterium 2.2%
- uncultured Acidobacteria bacterium 2.2%
- uncultured delta proteobacterium 1.9%
- uncultured archaeon 1.9%
- everything else 10.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.