opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219856
Severely-contaminated-sample9
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- severe
derived from this sample's metadata and per-run QC
30,865
Reads
855
Observed features
6.108
Shannon
0.905
Evenness
855
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.4, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171649
Per-run QC
- 16S identity
- 97.2%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.8%
- Archaea 2.3%
- Chloroflexota 32.1%
- Pseudomonadota 18.4%
- Acidobacteriota 15.4%
- Thermodesulfobacteriota 5.0%
- Planctomycetota 4.1%
- Myxococcota 4.0%
- Methylomirabilota 3.4%
- everything else 17.7%
- Anaerolineae 25.9%
- Gammaproteobacteria 14.5%
- Incertae Sedis 7.3%
- Vicinamibacteria 5.3%
- Acidobacteriae 5.1%
- Alphaproteobacteria 3.9%
- KD4-96 3.8%
- everything else 34.2%
- Incertae Sedis 19.3%
- Anaerolineales 18.6%
- Burkholderiales 7.9%
- Acidiferrobacterales 5.4%
- RBG-13-54-9 4.4%
- Vicinamibacterales 3.2%
- Methylomirabilales 2.5%
- everything else 38.8%
- Incertae Sedis 40.3%
- Anaerolineaceae 18.6%
- Acidiferrobacteraceae 5.4%
- Hydrogenophilaceae 3.8%
- Methylomirabilaceae 2.5%
- Geobacteraceae 2.0%
- Anaeromyxobacteraceae 1.7%
- everything else 25.6%
- Incertae Sedis 66.0%
- RBG-16-58-14 5.9%
- Sulfurifustis 3.5%
- Thiobacillus 2.9%
- Sh765B-TzT-35 2.5%
- Anaeromyxobacter 1.7%
- MND1 1.0%
- everything else 16.4%
- uncultured bacterium 69.9%
- uncultured Chloroflexi bacterium 5.5%
- uncultured Ectothiorhodospiraceae bacterium 3.5%
- uncultured soil bacterium 3.0%
- uncultured delta proteobacterium 2.3%
- uncultured archaeon 2.1%
- uncultured proteobacterium 1.9%
- everything else 11.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.