opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219857
Severely-contaminated-sample10
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- severe
derived from this sample's metadata and per-run QC
19,695
Reads
648
Observed features
5.906
Shannon
0.912
Evenness
648
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.41, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171648
Per-run QC
- 16S identity
- 97.9%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 96.2%
- Archaea 3.8%
- Chloroflexota 28.0%
- Pseudomonadota 17.5%
- Acidobacteriota 14.3%
- Methylomirabilota 7.9%
- Planctomycetota 4.9%
- Myxococcota 4.5%
- Thermodesulfobacteriota 4.5%
- everything else 18.5%
- Anaerolineae 21.3%
- Gammaproteobacteria 14.0%
- Methylomirabilia 7.9%
- Incertae Sedis 6.0%
- Vicinamibacteria 4.4%
- KD4-96 4.3%
- Planctomycetes 4.0%
- everything else 38.1%
- Incertae Sedis 19.4%
- Anaerolineales 13.8%
- Burkholderiales 8.4%
- Rokubacteriales 5.4%
- RBG-13-54-9 4.4%
- Acidiferrobacterales 4.4%
- Myxococcales 2.7%
- everything else 41.6%
- Incertae Sedis 43.7%
- Anaerolineaceae 13.8%
- Acidiferrobacteraceae 4.4%
- Methylomirabilaceae 2.5%
- Anaeromyxobacteraceae 2.4%
- Hydrogenophilaceae 2.3%
- Nitrosomonadaceae 1.9%
- everything else 29.1%
- Incertae Sedis 65.5%
- RBG-16-58-14 3.4%
- Sh765B-TzT-35 2.5%
- Anaeromyxobacter 2.4%
- Sulfurifustis 2.2%
- Thiobacillus 1.7%
- Polaromonas 1.1%
- everything else 21.3%
- uncultured bacterium 70.9%
- uncultured Chloroflexi bacterium 3.8%
- uncultured archaeon 3.6%
- uncultured soil bacterium 3.1%
- uncultured delta proteobacterium 2.2%
- uncultured Ectothiorhodospiraceae bacterium 2.2%
- uncultured proteobacterium 2.1%
- everything else 12.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.