opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219855
Severely-contaminated-sample8
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- severe
derived from this sample's metadata and per-run QC
23,765
Reads
682
Observed features
5.904
Shannon
0.905
Evenness
682
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.39, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171650
Per-run QC
- 16S identity
- 97.8%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.0%
- Archaea 2.9%
- Chloroflexota 29.3%
- Acidobacteriota 20.9%
- Pseudomonadota 15.2%
- Methylomirabilota 5.3%
- Planctomycetota 4.7%
- Myxococcota 3.6%
- Thermodesulfobacteriota 2.9%
- everything else 17.9%
- Anaerolineae 19.3%
- Gammaproteobacteria 11.8%
- Acidobacteriae 9.2%
- Vicinamibacteria 6.9%
- KD4-96 6.3%
- Methylomirabilia 5.3%
- Planctomycetes 4.2%
- everything else 37.1%
- Incertae Sedis 17.4%
- Anaerolineales 15.3%
- Burkholderiales 6.3%
- Terriglobales 5.8%
- Vicinamibacterales 3.8%
- Subgroup 17 3.0%
- Rokubacteriales 2.7%
- everything else 45.6%
- Incertae Sedis 42.0%
- Anaerolineaceae 15.3%
- Methylomirabilaceae 2.6%
- Acidiferrobacteraceae 2.4%
- Pedosphaeraceae 2.0%
- Gemmataceae 1.8%
- Nitrosomonadaceae 1.8%
- everything else 32.1%
- Incertae Sedis 66.3%
- Sh765B-TzT-35 2.5%
- RBG-16-58-14 1.8%
- Anaeromyxobacter 1.6%
- Sulfurifustis 1.6%
- Anaerolinea 1.2%
- MND1 1.2%
- everything else 23.8%
- uncultured bacterium 73.7%
- uncultured soil bacterium 4.1%
- uncultured Acidobacteria bacterium 3.0%
- uncultured archaeon 1.9%
- uncultured Ectothiorhodospiraceae bacterium 1.5%
- uncultured Chloroflexi bacterium 1.4%
- metagenome 1.2%
- everything else 13.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.