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SAMN06704756
Cd_contaminated_upland_soil_9
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-upland
derived from this sample's metadata and per-run QC
33,580
Reads
854
Observed features
6.082
Shannon
0.901
Evenness
854
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.2, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435157
Per-run QC
- 16S identity
- 97.4%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.0%
- Archaea 1.1%
- Chloroflexota 28.1%
- Pseudomonadota 20.8%
- Acidobacteriota 12.1%
- Methylomirabilota 7.9%
- Myxococcota 6.0%
- Thermodesulfobacteriota 5.9%
- Planctomycetota 3.7%
- everything else 15.4%
- Anaerolineae 22.4%
- Gammaproteobacteria 15.6%
- Methylomirabilia 7.9%
- Incertae Sedis 6.9%
- Alphaproteobacteria 5.2%
- Acidobacteriae 4.3%
- Myxococcia 3.5%
- everything else 34.2%
- Incertae Sedis 15.9%
- Anaerolineales 13.0%
- Burkholderiales 8.5%
- Rokubacteriales 6.3%
- Acidiferrobacterales 5.7%
- RBG-13-54-9 5.0%
- Aggregatilineales 3.6%
- everything else 41.8%
- Incertae Sedis 40.6%
- Anaerolineaceae 13.0%
- Acidiferrobacteraceae 5.7%
- Hydrogenophilaceae 3.4%
- Anaeromyxobacteraceae 2.9%
- Nitrosomonadaceae 2.5%
- Geobacteraceae 2.4%
- everything else 29.4%
- Incertae Sedis 65.5%
- RBG-16-58-14 3.4%
- Anaeromyxobacter 2.9%
- Sulfurifustis 2.7%
- Thiobacillus 2.6%
- MND1 1.6%
- Bryobacter 1.5%
- everything else 19.9%
- uncultured bacterium 73.7%
- uncultured Chloroflexi bacterium 3.9%
- uncultured proteobacterium 2.8%
- uncultured delta proteobacterium 2.5%
- uncultured soil bacterium 2.4%
- uncultured Acidobacteria bacterium 1.3%
- uncultured beta proteobacterium 1.1%
- everything else 12.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.