opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06219854
Severely-contaminated-sample7
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- severe
derived from this sample's metadata and per-run QC
10,576
Reads
349
Observed features
5.269
Shannon
0.9
Evenness
349
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.38, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5171651
Per-run QC
- 16S identity
- 98.9%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 25.1%
- Acidobacteriota 21.1%
- Chloroflexota 15.2%
- Thermodesulfobacteriota 8.5%
- Myxococcota 7.9%
- Methylomirabilota 2.7%
- Planctomycetota 2.6%
- everything else 17.1%
- Gammaproteobacteria 19.3%
- Acidobacteriae 11.9%
- Anaerolineae 11.1%
- Incertae Sedis 9.5%
- Alphaproteobacteria 5.8%
- Vicinamibacteria 5.3%
- Myxococcia 5.3%
- everything else 31.9%
- Incertae Sedis 17.8%
- Acidiferrobacterales 9.5%
- Burkholderiales 8.7%
- Anaerolineales 7.9%
- Terriglobales 6.4%
- Myxococcales 5.3%
- Vicinamibacterales 3.1%
- everything else 41.3%
- Incertae Sedis 42.1%
- Acidiferrobacteraceae 9.5%
- Anaerolineaceae 7.9%
- Hydrogenophilaceae 4.2%
- Anaeromyxobacteraceae 4.2%
- Geobacteraceae 2.8%
- Nitrosomonadaceae 2.6%
- everything else 26.6%
- Incertae Sedis 63.0%
- Sulfurifustis 7.4%
- Anaeromyxobacter 4.2%
- Thiobacillus 3.3%
- Nitrospira 1.6%
- Bryobacter 1.6%
- MND1 1.5%
- everything else 17.5%
- uncultured bacterium 72.5%
- uncultured Ectothiorhodospiraceae bacterium 7.4%
- uncultured soil bacterium 3.7%
- uncultured proteobacterium 2.7%
- uncultured delta proteobacterium 2.4%
- uncultured Acidobacteria bacterium 2.0%
- uncultured Chloroflexi bacterium 1.1%
- everything else 8.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.