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SAMN06704767
Cd_contaminated_paddy_soil_10
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
27,741
Reads
801
Observed features
6.092
Shannon
0.911
Evenness
801
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.31, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435146
Per-run QC
- 16S identity
- 94.5%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.4%
- Archaea 0.6%
- Pseudomonadota 35.5%
- Acidobacteriota 11.8%
- Myxococcota 10.3%
- Thermodesulfobacteriota 9.9%
- Gemmatimonadota 3.8%
- Chloroflexota 3.7%
- MBNT15 3.4%
- everything else 21.5%
- Gammaproteobacteria 25.0%
- Alphaproteobacteria 10.5%
- Incertae Sedis 8.5%
- Acidobacteriae 8.0%
- Myxococcia 5.9%
- Desulfuromonadia 4.6%
- Gemmatimonadia 3.8%
- everything else 33.7%
- Incertae Sedis 15.6%
- Burkholderiales 15.4%
- Myxococcales 5.9%
- Acidiferrobacterales 5.9%
- Hyphomicrobiales 4.7%
- Geobacterales 4.6%
- Gemmatimonadales 3.8%
- everything else 44.2%
- Incertae Sedis 31.1%
- Hydrogenophilaceae 5.9%
- Acidiferrobacteraceae 5.9%
- Anaeromyxobacteraceae 5.0%
- Geobacteraceae 4.6%
- Gemmatimonadaceae 3.8%
- Nitrosomonadaceae 3.6%
- everything else 40.1%
- Incertae Sedis 55.6%
- Anaeromyxobacter 5.0%
- Sulfurifustis 3.5%
- Thiobacillus 3.2%
- MND1 1.9%
- Spirochaeta 1.6%
- Bryobacter 1.3%
- everything else 27.9%
- uncultured bacterium 66.9%
- uncultured Ectothiorhodospiraceae bacterium 3.5%
- uncultured proteobacterium 2.9%
- uncultured soil bacterium 2.4%
- uncultured delta proteobacterium 2.2%
- uncultured Acidobacteria bacterium 1.9%
- uncultured Desulfuromonadales bacterium 1.8%
- everything else 18.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 84% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 83% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.