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SAMN06704771
Cd_contaminated_sediment_4
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
29,305
Reads
1,003
Observed features
6.43
Shannon
0.931
Evenness
1,003
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.35, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435142
Per-run QC
- 16S identity
- 97.6%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_21711 · RBG-16-58-14 356 (1.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.7%
- Chloroflexota 25.9%
- Pseudomonadota 20.7%
- Acidobacteriota 10.2%
- Bacteroidota 8.0%
- Verrucomicrobiota 6.8%
- Thermodesulfobacteriota 6.6%
- Planctomycetota 4.0%
- everything else 17.9%
- Anaerolineae 23.4%
- Gammaproteobacteria 19.1%
- Bacteroidia 8.0%
- Vicinamibacteria 6.8%
- Verrucomicrobiia 5.8%
- Planctomycetes 3.0%
- Desulfobulbia 2.9%
- everything else 31.1%
- Anaerolineales 20.7%
- Burkholderiales 13.2%
- Incertae Sedis 9.4%
- Bacteroidales 5.2%
- Vicinamibacterales 4.3%
- Pedosphaerales 4.2%
- Desulfobulbales 2.9%
- everything else 40.1%
- Incertae Sedis 23.9%
- Anaerolineaceae 20.7%
- Rhodocyclaceae 4.6%
- Pedosphaeraceae 4.2%
- Pirellulaceae 2.7%
- Hydrogenophilaceae 2.7%
- Comamonadaceae 2.1%
- everything else 39.0%
- Incertae Sedis 60.8%
- RBG-16-58-14 4.4%
- Thiobacillus 1.6%
- Candidatus Anammoximicrobium 1.6%
- Anaerolinea 1.2%
- Anaeromyxobacter 1.2%
- Sulfurisoma 1.1%
- everything else 28.2%
- uncultured bacterium 58.6%
- uncultured soil bacterium 8.0%
- uncultured prokaryote 6.7%
- metagenome 4.7%
- uncultured Chloroflexi bacterium 3.4%
- uncultured delta proteobacterium 1.4%
- uncultured Acidobacteria bacterium 1.2%
- everything else 16.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 97% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.