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SAMN06704768
Cd_contaminated_sediment_1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
19,166
Reads
721
Observed features
6.085
Shannon
0.925
Evenness
721
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.32, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435145
Per-run QC
- 16S identity
- 97.0%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_21711 · RBG-16-58-14 417 (2.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.6%
- Archaea 1.4%
- Chloroflexota 30.4%
- Pseudomonadota 19.1%
- Acidobacteriota 9.9%
- Cyanobacteriota 7.9%
- Bacteroidota 6.8%
- Verrucomicrobiota 5.8%
- Thermodesulfobacteriota 3.4%
- everything else 16.7%
- Anaerolineae 28.0%
- Gammaproteobacteria 17.2%
- Cyanobacteriia 7.8%
- Bacteroidia 6.8%
- Vicinamibacteria 6.4%
- Verrucomicrobiia 4.8%
- Planctomycetes 2.5%
- everything else 26.5%
- Anaerolineales 25.3%
- Burkholderiales 11.9%
- Incertae Sedis 8.8%
- Chloroplast 6.6%
- Vicinamibacterales 3.7%
- Pedosphaerales 3.5%
- Bacteroidales 3.2%
- everything else 36.9%
- Incertae Sedis 25.8%
- Anaerolineaceae 25.3%
- Pedosphaeraceae 3.5%
- Rhodocyclaceae 3.0%
- Comamonadaceae 2.8%
- Pirellulaceae 2.3%
- Hydrogenophilaceae 2.2%
- everything else 35.0%
- Incertae Sedis 59.2%
- RBG-16-58-14 6.4%
- Thiobacillus 1.6%
- Candidatus Anammoximicrobium 1.3%
- Aminicenans 1.2%
- Anaerolinea 1.1%
- Pseudomonas 0.9%
- everything else 28.2%
- uncultured bacterium 57.4%
- uncultured prokaryote 6.6%
- uncultured soil bacterium 6.0%
- metagenome 4.2%
- uncultured Chloroflexi bacterium 3.9%
- uncultured Acidobacteria bacterium 1.3%
- uncultured proteobacterium 0.9%
- everything else 19.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.