opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704762
Cd_contaminated_paddy_soil_5
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
23,351
Reads
563
Observed features
5.704
Shannon
0.901
Evenness
563
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.26, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435151
Per-run QC
- 16S identity
- 97.2%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 92.4%
- Archaea 7.6%
- Chloroflexota 48.9%
- Acidobacteriota 13.3%
- Pseudomonadota 6.9%
- Thermodesulfobacteriota 4.8%
- Thermoproteota 4.7%
- Planctomycetota 3.9%
- Sva0485 2.2%
- everything else 15.3%
- Anaerolineae 47.2%
- Gammaproteobacteria 6.5%
- Aminicenantia 5.8%
- Incertae Sedis 5.7%
- Bathyarchaeia 4.6%
- Vicinamibacteria 2.8%
- Phycisphaerae 2.4%
- everything else 24.8%
- Anaerolineales 29.9%
- Incertae Sedis 23.8%
- Aggregatilineales 6.0%
- Aminicenantales 5.8%
- RBG-13-54-9 5.7%
- Burkholderiales 5.0%
- MSBL9 2.1%
- everything else 21.5%
- Incertae Sedis 39.8%
- Anaerolineaceae 29.9%
- Aminicenantaceae 5.8%
- Hydrogenophilaceae 3.2%
- Aggregatilineaceae 2.2%
- SG8-4 2.1%
- Geobacteraceae 1.6%
- everything else 15.4%
- Incertae Sedis 65.3%
- RBG-16-58-14 9.5%
- Aminicenans 5.8%
- Thiobacillus 3.0%
- Candidatus Solibacter 1.1%
- Aggregatilinea 1.1%
- Marine Benthic Group D and DHVEG-1 1.1%
- everything else 13.1%
- uncultured bacterium 67.5%
- uncultured Chloroflexi bacterium 9.0%
- uncultured archaeon 7.6%
- uncultured planctomycete 2.4%
- uncultured prokaryote 2.3%
- uncultured delta proteobacterium 2.0%
- uncultured soil bacterium 1.7%
- everything else 7.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 100% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 86% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.