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SAMN06704777
Cd_contaminated_sediment_10
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
24,482
Reads
919
Observed features
6.289
Shannon
0.922
Evenness
919
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.41, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435136
Per-run QC
- 16S identity
- 96.5%
- Q30
- 98.0%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_21711 · RBG-16-58-14 680 (2.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 95.9%
- Archaea 4.1%
- Chloroflexota 38.9%
- Pseudomonadota 13.4%
- Acidobacteriota 7.2%
- Bacteroidota 5.4%
- Verrucomicrobiota 5.4%
- Cyanobacteriota 4.7%
- Planctomycetota 3.8%
- everything else 21.2%
- Anaerolineae 36.7%
- Gammaproteobacteria 12.6%
- Bacteroidia 5.4%
- Cyanobacteriia 4.6%
- Verrucomicrobiia 3.9%
- Vicinamibacteria 3.8%
- Planctomycetes 2.9%
- everything else 30.0%
- Anaerolineales 32.6%
- Burkholderiales 9.6%
- Incertae Sedis 9.3%
- Chloroplast 4.2%
- Bacteroidales 3.8%
- Pedosphaerales 2.9%
- Pirellulales 2.6%
- everything else 34.9%
- Anaerolineaceae 32.6%
- Incertae Sedis 24.0%
- Rhodocyclaceae 3.4%
- Pedosphaeraceae 2.9%
- Pirellulaceae 2.6%
- Sulfurimonadaceae 2.2%
- Hydrogenophilaceae 2.2%
- everything else 30.0%
- Incertae Sedis 59.7%
- RBG-16-58-14 8.7%
- Sulfuricurvum 2.2%
- Anaerolinea 1.6%
- Candidatus Anammoximicrobium 1.5%
- Thiobacillus 1.3%
- Aminicenans 1.2%
- everything else 23.9%
- uncultured bacterium 60.6%
- uncultured soil bacterium 6.7%
- uncultured prokaryote 4.6%
- uncultured Chloroflexi bacterium 4.5%
- metagenome 4.4%
- uncultured euryarchaeote 1.8%
- uncultured archaeon 1.7%
- everything else 15.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 93% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.