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SAMN06704774
Cd_contaminated_sediment_7
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-sediment
derived from this sample's metadata and per-run QC
15,263
Reads
637
Observed features
6.03
Shannon
0.934
Evenness
637
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.38, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435139
Per-run QC
- 16S identity
- 97.7%
- Q30
- 98.1%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_21711 · RBG-16-58-14 354 (2.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.3%
- Archaea 2.7%
- Chloroflexota 34.6%
- Pseudomonadota 14.3%
- Acidobacteriota 10.2%
- Bacteroidota 6.0%
- Verrucomicrobiota 5.4%
- Thermodesulfobacteriota 5.1%
- Planctomycetota 4.8%
- everything else 19.5%
- Anaerolineae 32.0%
- Gammaproteobacteria 13.5%
- Bacteroidia 6.0%
- Vicinamibacteria 6.0%
- Verrucomicrobiia 4.3%
- Planctomycetes 3.6%
- Incertae Sedis 2.8%
- everything else 31.8%
- Anaerolineales 28.9%
- Burkholderiales 10.7%
- Incertae Sedis 10.4%
- Bacteroidales 4.6%
- Pedosphaerales 3.6%
- Vicinamibacterales 3.5%
- Pirellulales 3.4%
- everything else 35.0%
- Anaerolineaceae 28.9%
- Incertae Sedis 22.9%
- Rhodocyclaceae 4.2%
- Pedosphaeraceae 3.6%
- Pirellulaceae 3.4%
- Hydrogenophilaceae 3.0%
- Sulfurimonadaceae 2.0%
- everything else 32.0%
- Incertae Sedis 61.1%
- RBG-16-58-14 6.7%
- Sulfuricurvum 2.0%
- Candidatus Anammoximicrobium 1.8%
- Anaerolinea 1.8%
- Thiobacillus 1.4%
- Aminicenans 1.4%
- everything else 23.8%
- uncultured bacterium 56.7%
- uncultured soil bacterium 7.8%
- uncultured prokaryote 6.4%
- uncultured Chloroflexi bacterium 4.4%
- metagenome 4.3%
- uncultured Acidobacteria bacterium 2.0%
- uncultured archaeon 1.7%
- everything else 16.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 95% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
- composition 94% similar (genus)
- same collection date
- shared: 0-20cm, Cd-sediment
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.