opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704766
Cd_contaminated_paddy_soil_9
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
21,389
Reads
762
Observed features
6.187
Shannon
0.932
Evenness
762
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.3, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435147
Per-run QC
- 16S identity
- 98.0%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.4%
- Archaea 1.7%
- Chloroflexota 26.2%
- Pseudomonadota 19.4%
- Acidobacteriota 17.2%
- Myxococcota 4.1%
- Gemmatimonadota 3.6%
- Thermodesulfobacteriota 3.6%
- Planctomycetota 3.5%
- everything else 22.3%
- Anaerolineae 23.0%
- Gammaproteobacteria 13.2%
- Incertae Sedis 7.2%
- Acidobacteriae 6.5%
- Alphaproteobacteria 6.3%
- Vicinamibacteria 4.4%
- Gemmatimonadia 3.5%
- everything else 35.8%
- Incertae Sedis 18.1%
- Anaerolineales 10.5%
- RBG-13-54-9 7.9%
- Burkholderiales 5.7%
- Aggregatilineales 3.9%
- Gemmatimonadales 3.5%
- Vicinamibacterales 3.3%
- everything else 47.2%
- Incertae Sedis 41.8%
- Anaerolineaceae 10.5%
- Gemmatimonadaceae 3.5%
- Nitrosomonadaceae 2.9%
- Acidiferrobacteraceae 2.8%
- Xanthobacteraceae 2.2%
- Pedosphaeraceae 1.9%
- everything else 34.3%
- Incertae Sedis 69.2%
- MND1 2.3%
- Sulfurifustis 1.7%
- Bryobacter 1.3%
- Sh765B-TzT-35 1.2%
- Nitrospira 1.2%
- Aquicella 1.1%
- everything else 22.0%
- uncultured bacterium 69.9%
- uncultured Acidobacteria bacterium 2.8%
- uncultured delta proteobacterium 2.8%
- uncultured soil bacterium 2.3%
- metagenome 2.1%
- uncultured Chloroflexi bacterium 1.7%
- uncultured proteobacterium 1.7%
- everything else 16.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.