opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMN06704765
Cd_contaminated_paddy_soil_8
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-20cm
- Cd-paddy
derived from this sample's metadata and per-run QC
25,115
Reads
768
Observed features
6.069
Shannon
0.913
Evenness
768
Chao1
Where and when
- Collected
- 2014-12
- Depth
- 0-20cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- 26.29, 103.53
- Platforms
- Illumina MiSeq
Runs
SRR5435148
Per-run QC
- 16S identity
- 98.0%
- Q30
- 97.9%
- Region
- V4
- Read length
- 253 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 97.2%
- Archaea 2.8%
- Chloroflexota 33.4%
- Acidobacteriota 16.6%
- Pseudomonadota 15.0%
- Planctomycetota 9.5%
- Gemmatimonadota 3.4%
- Methylomirabilota 2.7%
- Thermoproteota 2.4%
- everything else 17.1%
- Anaerolineae 24.4%
- Planctomycetes 8.9%
- Gammaproteobacteria 8.1%
- Vicinamibacteria 7.8%
- Alphaproteobacteria 7.0%
- Acidobacteriae 4.1%
- Incertae Sedis 3.4%
- everything else 36.4%
- Incertae Sedis 13.8%
- Anaerolineales 10.5%
- Aggregatilineales 9.2%
- Vicinamibacterales 7.0%
- Gemmatales 4.8%
- RBG-13-54-9 4.4%
- Burkholderiales 4.2%
- everything else 46.1%
- Incertae Sedis 40.6%
- Anaerolineaceae 10.5%
- Aggregatilineaceae 4.8%
- Gemmataceae 4.8%
- Gemmatimonadaceae 3.4%
- A4b 2.5%
- Nitrosomonadaceae 2.1%
- everything else 31.5%
- Incertae Sedis 71.1%
- Gemmata 2.6%
- Gemmatimonas 1.7%
- Bryobacter 1.1%
- MND1 1.1%
- RBG-16-58-14 1.0%
- Candidatus Nitrosotalea 0.9%
- everything else 20.5%
- uncultured bacterium 76.0%
- uncultured Acidobacteria bacterium 3.6%
- uncultured Chloroflexi bacterium 2.5%
- uncultured archaeon 1.7%
- uncultured soil bacterium 1.7%
- uncultured Alphaproteobacteria bacterium 1.0%
- metagenome 1.0%
- everything else 12.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2. (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: 0-20cm, Cd-paddy
- composition 89% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 88% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
- composition 87% similar (genus)
- same collection date
- shared: 0-20cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJNA361046-20260926/.