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SAMD00160688
microbial community in surface soil collected at O-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
31,724
Reads
1,423
Observed features
6.82
Shannon
0.939
Evenness
1,423
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194869
Per-run QC
- 16S identity
- 85.6%
- Q30
- 92.3%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.3%
- Archaea 0.7%
- Pseudomonadota 25.4%
- Actinomycetota 19.1%
- Acidobacteriota 13.9%
- Bacteroidota 9.7%
- Planctomycetota 9.2%
- Chloroflexota 6.0%
- Verrucomicrobiota 4.9%
- everything else 11.9%
- Gammaproteobacteria 13.4%
- Alphaproteobacteria 11.9%
- Bacteroidia 9.7%
- Vicinamibacteria 8.8%
- Thermoleophilia 7.9%
- Actinobacteria 7.9%
- Planctomycetes 6.8%
- everything else 33.6%
- Burkholderiales 8.7%
- Vicinamibacterales 8.6%
- Hyphomicrobiales 7.0%
- Incertae Sedis 6.3%
- Chitinophagales 6.3%
- Gaiellales 4.0%
- Solirubrobacterales 3.9%
- everything else 55.2%
- Incertae Sedis 21.9%
- Chitinophagaceae 5.7%
- Xanthobacteraceae 4.8%
- Chthoniobacteraceae 3.5%
- Gemmataceae 2.9%
- Gemmatimonadaceae 2.8%
- Comamonadaceae 2.7%
- everything else 55.7%
- Incertae Sedis 51.0%
- Candidatus Udaeobacter 2.4%
- Bradyrhizobium 1.8%
- Ellin6067 1.5%
- Rhizobacter 1.5%
- Gemmatimonas 1.3%
- Acidiferrimicrobium 1.2%
- everything else 39.3%
- uncultured bacterium 61.9%
- metagenome 5.1%
- uncultured Acidobacteria bacterium 4.1%
- uncultured Comamonadaceae bacterium 1.4%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured actinobacterium 1.2%
- Bradyrhizobium elkanii 1.1%
- everything else 24.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.