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SAMD00160725
microbial community in surface soil collected at I-4 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
25,904
Reads
1,210
Observed features
6.669
Shannon
0.939
Evenness
1,210
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194906
Per-run QC
- 16S identity
- 79.2%
- Q30
- 91.6%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_1 · Bradyrhizobium 206 (0.8%)
- ASV_33334 · Rhizobacter 177 (0.7%)
- ASV_34773 · Incertae Sedis 136 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 30.1%
- Acidobacteriota 15.8%
- Actinomycetota 13.5%
- Planctomycetota 8.2%
- Chloroflexota 6.8%
- Bacteroidota 6.2%
- Bacillota 4.0%
- everything else 15.5%
- Gammaproteobacteria 15.8%
- Alphaproteobacteria 14.3%
- Vicinamibacteria 7.6%
- Planctomycetes 6.9%
- Bacteroidia 6.2%
- Actinobacteria 6.0%
- Thermoleophilia 4.8%
- everything else 38.5%
- Burkholderiales 9.8%
- Hyphomicrobiales 9.3%
- Vicinamibacterales 7.2%
- Incertae Sedis 7.0%
- Chitinophagales 4.7%
- Chthoniobacterales 3.0%
- Gemmatales 2.7%
- everything else 56.2%
- Incertae Sedis 24.2%
- Xanthobacteraceae 5.7%
- Chitinophagaceae 4.4%
- Chthoniobacteraceae 2.9%
- Nitrosomonadaceae 2.7%
- Gemmataceae 2.7%
- Gemmatimonadaceae 2.6%
- everything else 54.8%
- Incertae Sedis 49.3%
- Bradyrhizobium 1.9%
- Candidatus Udaeobacter 1.9%
- Ellin6067 1.6%
- Enterobacter 1.1%
- Acidiferrimicrobium 1.0%
- Ferruginibacter 1.0%
- everything else 42.2%
- uncultured bacterium 63.2%
- metagenome 4.3%
- uncultured Acidobacteria bacterium 2.5%
- Bradyrhizobium elkanii 1.4%
- uncultured soil bacterium 1.3%
- Enterobacter sp. 1.1%
- uncultured Comamonadaceae bacterium 1.0%
- everything else 25.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.