opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160711
microbial community in rhizosphere soil collected at I-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,483
Reads
1,176
Observed features
6.639
Shannon
0.939
Evenness
1,176
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194892
Per-run QC
- 16S identity
- 79.9%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 242 (0.9%)
- ASV_22223 · Candidatus Udaeobacter 99 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 27.0%
- Acidobacteriota 17.1%
- Actinomycetota 16.4%
- Planctomycetota 7.5%
- Chloroflexota 6.1%
- Bacteroidota 5.3%
- Myxococcota 4.2%
- everything else 16.4%
- Alphaproteobacteria 14.1%
- Gammaproteobacteria 12.9%
- Vicinamibacteria 7.0%
- Acidobacteriae 6.7%
- Actinobacteria 6.7%
- Thermoleophilia 6.6%
- Planctomycetes 6.2%
- everything else 40.0%
- Hyphomicrobiales 9.4%
- Burkholderiales 9.2%
- Incertae Sedis 7.3%
- Vicinamibacterales 6.4%
- Chitinophagales 4.3%
- Gaiellales 3.4%
- Terriglobales 3.4%
- everything else 56.6%
- Incertae Sedis 26.4%
- Xanthobacteraceae 6.1%
- Chitinophagaceae 3.9%
- Nitrosomonadaceae 3.3%
- Gemmatimonadaceae 2.6%
- Gemmataceae 2.5%
- Chthoniobacteraceae 2.3%
- everything else 52.8%
- Incertae Sedis 51.6%
- Bradyrhizobium 2.1%
- Ellin6067 1.9%
- Candidatus Udaeobacter 1.7%
- Gemmatimonas 1.5%
- Acidibacter 1.4%
- Candidatus Solibacter 1.3%
- everything else 38.6%
- uncultured bacterium 64.9%
- metagenome 4.0%
- uncultured Acidobacteria bacterium 3.4%
- uncultured Alphaproteobacteria bacterium 1.2%
- uncultured proteobacterium 1.0%
- Bradyrhizobium elkanii 0.9%
- uncultured Comamonadaceae bacterium 0.9%
- everything else 23.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.