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SAMD00160726
microbial community in surface soil collected at I-4 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
25,867
Reads
1,137
Observed features
6.651
Shannon
0.945
Evenness
1,137
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194907
Per-run QC
- 16S identity
- 80.0%
- Q30
- 91.8%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_11112 · Bradyrhizobium 211 (0.8%)
- ASV_22223 · Candidatus Udaeobacter 104 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 23.3%
- Acidobacteriota 16.5%
- Actinomycetota 15.9%
- Planctomycetota 8.4%
- Chloroflexota 7.9%
- Bacillota 5.3%
- Bacteroidota 5.3%
- everything else 17.4%
- Alphaproteobacteria 13.6%
- Gammaproteobacteria 9.7%
- Vicinamibacteria 8.0%
- Actinobacteria 7.4%
- Planctomycetes 7.1%
- Bacteroidia 5.3%
- Thermoleophilia 5.3%
- everything else 43.5%
- Hyphomicrobiales 9.0%
- Incertae Sedis 8.3%
- Vicinamibacterales 7.5%
- Burkholderiales 7.0%
- Chitinophagales 4.0%
- Chthoniobacterales 3.3%
- Gemmatales 3.0%
- everything else 57.8%
- Incertae Sedis 26.2%
- Xanthobacteraceae 5.3%
- Chitinophagaceae 3.8%
- Chthoniobacteraceae 3.2%
- Gemmataceae 3.0%
- Gemmatimonadaceae 2.6%
- Nitrosomonadaceae 2.1%
- everything else 53.8%
- Incertae Sedis 50.2%
- Bradyrhizobium 2.0%
- Candidatus Udaeobacter 1.9%
- Chthoniobacter 1.3%
- Gemmatimonas 1.2%
- Acidiferrimicrobium 1.2%
- Ellin6067 1.1%
- everything else 41.2%
- uncultured bacterium 62.8%
- metagenome 4.9%
- uncultured Acidobacteria bacterium 3.0%
- uncultured Verrucomicrobia bacterium 1.3%
- uncultured planctomycete 1.1%
- uncultured Alphaproteobacteria bacterium 1.0%
- Bradyrhizobium elkanii 0.8%
- everything else 25.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.