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SAMD00160727
microbial community in rhizosphere soil collected at I-4 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
24,182
Reads
1,232
Observed features
6.708
Shannon
0.943
Evenness
1,232
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194908
Per-run QC
- 16S identity
- 82.6%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 175 (0.7%)
- ASV_33334 · Rhizobacter 99 (0.4%)
- ASV_34773 · Incertae Sedis 104 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 24.9%
- Acidobacteriota 18.7%
- Actinomycetota 14.2%
- Chloroflexota 8.7%
- Planctomycetota 7.9%
- Verrucomicrobiota 4.8%
- Bacteroidota 4.6%
- everything else 16.2%
- Alphaproteobacteria 14.0%
- Gammaproteobacteria 10.9%
- Vicinamibacteria 9.7%
- Actinobacteria 6.6%
- Planctomycetes 6.3%
- Acidobacteriae 5.1%
- Thermoleophilia 4.8%
- everything else 42.5%
- Hyphomicrobiales 9.4%
- Vicinamibacterales 9.2%
- Incertae Sedis 8.6%
- Burkholderiales 7.9%
- Chthoniobacterales 3.8%
- Chitinophagales 3.4%
- Gaiellales 2.7%
- everything else 55.2%
- Incertae Sedis 28.4%
- Xanthobacteraceae 5.9%
- Chthoniobacteraceae 3.6%
- Chitinophagaceae 3.1%
- Nitrosomonadaceae 2.6%
- Gemmataceae 2.6%
- Gemmatimonadaceae 2.5%
- everything else 51.2%
- Incertae Sedis 53.3%
- Candidatus Udaeobacter 2.3%
- Bradyrhizobium 1.9%
- Ellin6067 1.4%
- Acidiferrimicrobium 1.3%
- Chthoniobacter 1.2%
- Candidatus Solibacter 1.2%
- everything else 37.4%
- uncultured bacterium 64.4%
- metagenome 4.4%
- uncultured Acidobacteria bacterium 3.2%
- uncultured Verrucomicrobia bacterium 1.4%
- Bradyrhizobium elkanii 1.4%
- uncultured Alphaproteobacteria bacterium 1.0%
- uncultured actinobacterium 0.9%
- everything else 23.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.