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SAMD00160715
microbial community in rhizosphere soil collected at I-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,154
Reads
1,270
Observed features
6.692
Shannon
0.936
Evenness
1,270
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194896
Per-run QC
- 16S identity
- 81.8%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 183 (0.7%)
- ASV_33334 · Rhizobacter 149 (0.6%)
- ASV_34773 · Incertae Sedis 166 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 27.5%
- Acidobacteriota 15.9%
- Actinomycetota 14.0%
- Bacteroidota 9.0%
- Planctomycetota 6.4%
- Chloroflexota 4.9%
- Bacillota 4.6%
- everything else 17.6%
- Alphaproteobacteria 14.5%
- Gammaproteobacteria 13.1%
- Bacteroidia 9.0%
- Vicinamibacteria 7.3%
- Actinobacteria 6.0%
- Planctomycetes 5.5%
- Thermoleophilia 4.8%
- everything else 39.8%
- Burkholderiales 9.7%
- Hyphomicrobiales 9.3%
- Incertae Sedis 8.2%
- Vicinamibacterales 6.9%
- Chitinophagales 4.8%
- Chthoniobacterales 3.4%
- Gemmatimonadales 3.4%
- everything else 54.3%
- Incertae Sedis 27.0%
- Xanthobacteraceae 6.0%
- Chitinophagaceae 4.5%
- Gemmatimonadaceae 3.4%
- Chthoniobacteraceae 3.3%
- Comamonadaceae 3.2%
- Nitrosomonadaceae 2.8%
- everything else 49.9%
- Incertae Sedis 50.2%
- Candidatus Udaeobacter 2.4%
- Flavobacterium 2.4%
- Bradyrhizobium 1.6%
- Ellin6067 1.6%
- Gemmatimonas 1.5%
- Rhizobacter 1.4%
- everything else 38.9%
- uncultured bacterium 64.1%
- metagenome 5.3%
- uncultured Acidobacteria bacterium 3.1%
- Flavobacterium sp. VMW 1.7%
- uncultured Comamonadaceae bacterium 1.3%
- Bradyrhizobium elkanii 1.2%
- uncultured Bacteroidetes bacterium 0.9%
- everything else 22.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.