opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160689
microbial community in surface soil collected at O-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
31,899
Reads
1,344
Observed features
6.748
Shannon
0.937
Evenness
1,344
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194870
Per-run QC
- 16S identity
- 84.4%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 208 (0.7%)
- ASV_33334 · Rhizobacter 295 (0.9%)
- ASV_34773 · Incertae Sedis 142 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 26.9%
- Acidobacteriota 19.5%
- Bacteroidota 14.0%
- Actinomycetota 10.1%
- Planctomycetota 6.5%
- Myxococcota 5.2%
- Verrucomicrobiota 4.7%
- everything else 13.1%
- Gammaproteobacteria 17.7%
- Bacteroidia 14.0%
- Vicinamibacteria 12.8%
- Alphaproteobacteria 9.3%
- Verrucomicrobiia 4.7%
- Actinobacteria 4.3%
- Polyangiia 4.3%
- everything else 32.9%
- Vicinamibacterales 12.3%
- Burkholderiales 12.0%
- Chitinophagales 9.0%
- Incertae Sedis 6.7%
- Hyphomicrobiales 4.8%
- Gemmatimonadales 4.0%
- Polyangiales 2.9%
- everything else 48.2%
- Incertae Sedis 24.8%
- Chitinophagaceae 8.3%
- Nitrosomonadaceae 4.9%
- Gemmatimonadaceae 4.0%
- Xanthobacteraceae 3.1%
- Comamonadaceae 3.1%
- Chthoniobacteraceae 2.8%
- everything else 49.0%
- Incertae Sedis 54.6%
- Ellin6067 3.5%
- Candidatus Udaeobacter 2.1%
- Flavobacterium 1.8%
- Ferruginibacter 1.7%
- Rhizobacter 1.6%
- Gemmatimonas 1.5%
- everything else 33.2%
- uncultured bacterium 63.2%
- metagenome 5.8%
- uncultured Acidobacteria bacterium 5.5%
- uncultured Comamonadaceae bacterium 1.5%
- uncultured proteobacterium 1.1%
- uncultured beta proteobacterium 1.0%
- uncultured soil bacterium 1.0%
- everything else 20.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 92% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.