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SAMD00160706
microbial community in surface soil collected at I-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
25,706
Reads
1,332
Observed features
6.779
Shannon
0.942
Evenness
1,332
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194887
Per-run QC
- 16S identity
- 80.2%
- Q30
- 91.7%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 29.0%
- Acidobacteriota 20.1%
- Actinomycetota 10.0%
- Bacteroidota 8.0%
- Planctomycetota 7.9%
- Myxococcota 5.1%
- Chloroflexota 4.4%
- everything else 15.5%
- Gammaproteobacteria 16.7%
- Alphaproteobacteria 12.2%
- Vicinamibacteria 12.1%
- Bacteroidia 8.0%
- Planctomycetes 6.0%
- Actinobacteria 4.7%
- Acidobacteriae 4.3%
- everything else 35.9%
- Vicinamibacterales 11.5%
- Burkholderiales 11.0%
- Chitinophagales 6.2%
- Incertae Sedis 6.1%
- Hyphomicrobiales 5.9%
- Gemmatimonadales 3.0%
- Chthoniobacterales 2.7%
- everything else 53.6%
- Incertae Sedis 26.9%
- Chitinophagaceae 5.9%
- Nitrosomonadaceae 4.0%
- Xanthobacteraceae 3.5%
- Gemmatimonadaceae 3.0%
- Comamonadaceae 2.8%
- Chthoniobacteraceae 2.6%
- everything else 51.2%
- Incertae Sedis 53.6%
- Ellin6067 2.9%
- Acidibacter 1.8%
- Ferruginibacter 1.7%
- Gemmatimonas 1.6%
- Candidatus Udaeobacter 1.5%
- Bradyrhizobium 1.2%
- everything else 35.7%
- uncultured bacterium 65.3%
- metagenome 6.9%
- uncultured Acidobacteria bacterium 3.9%
- uncultured proteobacterium 1.5%
- uncultured Verrucomicrobia bacterium 1.4%
- uncultured soil bacterium 1.0%
- uncultured Comamonadaceae bacterium 1.0%
- everything else 19.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.