opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160712
microbial community in surface soil collected at I-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
31,718
Reads
1,513
Observed features
6.882
Shannon
0.94
Evenness
1,513
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194893
Per-run QC
- 16S identity
- 84.4%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 229 (0.7%)
- ASV_33334 · Rhizobacter 182 (0.6%)
- ASV_34773 · Incertae Sedis 147 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 25.6%
- Acidobacteriota 20.5%
- Actinomycetota 10.8%
- Planctomycetota 8.5%
- Bacteroidota 8.0%
- Chloroflexota 6.3%
- Verrucomicrobiota 4.8%
- everything else 15.5%
- Gammaproteobacteria 13.2%
- Alphaproteobacteria 12.4%
- Vicinamibacteria 11.7%
- Bacteroidia 8.0%
- Planctomycetes 7.1%
- Verrucomicrobiia 4.8%
- Thermoleophilia 4.3%
- everything else 38.5%
- Vicinamibacterales 11.3%
- Burkholderiales 9.2%
- Incertae Sedis 8.3%
- Hyphomicrobiales 7.4%
- Chitinophagales 5.9%
- Chthoniobacterales 3.8%
- Gemmatales 3.3%
- everything else 50.8%
- Incertae Sedis 29.3%
- Chitinophagaceae 5.4%
- Xanthobacteraceae 4.5%
- Chthoniobacteraceae 3.6%
- Gemmataceae 3.3%
- Gemmatimonadaceae 2.7%
- Comamonadaceae 2.7%
- everything else 48.4%
- Incertae Sedis 55.2%
- Candidatus Udaeobacter 2.5%
- Ellin6067 1.7%
- Ferruginibacter 1.5%
- Bradyrhizobium 1.4%
- Gemmatimonas 1.3%
- Sphingomonas 1.3%
- everything else 35.2%
- uncultured bacterium 66.1%
- metagenome 5.6%
- uncultured Acidobacteria bacterium 4.5%
- uncultured soil bacterium 1.1%
- Bradyrhizobium elkanii 1.0%
- uncultured Comamonadaceae bacterium 1.0%
- uncultured actinobacterium 0.9%
- everything else 19.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.