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SAMD00160690
microbial community in surface soil collected at O-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
39,268
Reads
1,534
Observed features
6.886
Shannon
0.939
Evenness
1,534
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194871
Per-run QC
- 16S identity
- 82.9%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 28.5%
- Acidobacteriota 16.9%
- Bacteroidota 13.8%
- Actinomycetota 11.6%
- Planctomycetota 6.4%
- Myxococcota 5.5%
- Verrucomicrobiota 4.5%
- everything else 12.9%
- Gammaproteobacteria 18.8%
- Bacteroidia 13.8%
- Vicinamibacteria 10.4%
- Alphaproteobacteria 9.7%
- Actinobacteria 5.2%
- Polyangiia 4.6%
- Verrucomicrobiia 4.5%
- everything else 33.0%
- Burkholderiales 12.9%
- Vicinamibacterales 10.1%
- Chitinophagales 9.2%
- Incertae Sedis 5.9%
- Hyphomicrobiales 5.2%
- Gemmatimonadales 4.3%
- Polyangiales 3.0%
- everything else 49.4%
- Incertae Sedis 22.1%
- Chitinophagaceae 8.6%
- Nitrosomonadaceae 5.1%
- Gemmatimonadaceae 4.3%
- Comamonadaceae 3.6%
- Xanthobacteraceae 3.4%
- SC-I-84 2.7%
- everything else 50.1%
- Incertae Sedis 52.8%
- Ellin6067 3.6%
- Gemmatimonas 1.7%
- Candidatus Udaeobacter 1.7%
- Ferruginibacter 1.7%
- Rhizobacter 1.7%
- Flavobacterium 1.5%
- everything else 35.3%
- uncultured bacterium 62.5%
- metagenome 5.6%
- uncultured Acidobacteria bacterium 4.1%
- uncultured Comamonadaceae bacterium 1.6%
- uncultured Gemmatimonadetes bacterium 1.2%
- uncultured Chitinophagaceae bacterium 1.1%
- uncultured soil bacterium 1.1%
- everything else 22.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 92% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.