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SAMD00160720
microbial community in surface soil collected at I-3 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
32,315
Reads
1,493
Observed features
6.851
Shannon
0.937
Evenness
1,493
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194901
Per-run QC
- 16S identity
- 80.9%
- Q30
- 91.5%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 183 (0.6%)
- ASV_33334 · Rhizobacter 120 (0.4%)
- ASV_34773 · Incertae Sedis 161 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 29.7%
- Acidobacteriota 20.6%
- Bacteroidota 8.7%
- Actinomycetota 8.6%
- Planctomycetota 8.1%
- Chloroflexota 5.0%
- Myxococcota 3.7%
- everything else 15.6%
- Gammaproteobacteria 18.2%
- Vicinamibacteria 12.3%
- Alphaproteobacteria 11.5%
- Bacteroidia 8.7%
- Planctomycetes 7.1%
- Acidobacteriae 4.9%
- Verrucomicrobiia 3.7%
- everything else 33.6%
- Burkholderiales 12.6%
- Vicinamibacterales 11.4%
- Incertae Sedis 8.0%
- Hyphomicrobiales 6.9%
- Chitinophagales 6.8%
- Gemmatales 3.3%
- Gemmatimonadales 3.0%
- everything else 48.0%
- Incertae Sedis 31.3%
- Chitinophagaceae 5.9%
- Nitrosomonadaceae 5.1%
- Xanthobacteraceae 4.6%
- Gemmataceae 3.3%
- SC-I-84 3.3%
- Gemmatimonadaceae 3.0%
- everything else 43.6%
- Incertae Sedis 57.8%
- Ellin6067 3.9%
- Ferruginibacter 1.6%
- Gemmatimonas 1.4%
- Bradyrhizobium 1.3%
- Candidatus Udaeobacter 1.2%
- Acidibacter 1.2%
- everything else 31.5%
- uncultured bacterium 67.8%
- metagenome 5.0%
- uncultured Acidobacteria bacterium 4.8%
- uncultured soil bacterium 1.3%
- Bradyrhizobium elkanii 1.1%
- uncultured proteobacterium 1.0%
- uncultured delta proteobacterium 0.8%
- everything else 18.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.