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SAMD00160710
microbial community in rhizosphere soil collected at I-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
27,372
Reads
1,293
Observed features
6.74
Shannon
0.941
Evenness
1,293
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194891
Per-run QC
- 16S identity
- 84.8%
- Q30
- 92.4%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 170 (0.6%)
- ASV_33334 · Rhizobacter 149 (0.5%)
- ASV_34773 · Incertae Sedis 126 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 30.1%
- Acidobacteriota 20.6%
- Actinomycetota 9.6%
- Planctomycetota 7.4%
- Bacteroidota 6.8%
- Myxococcota 4.6%
- Chloroflexota 4.5%
- everything else 16.4%
- Gammaproteobacteria 17.3%
- Alphaproteobacteria 12.8%
- Vicinamibacteria 11.8%
- Bacteroidia 6.8%
- Planctomycetes 6.5%
- Acidobacteriae 5.0%
- Actinobacteria 3.9%
- everything else 36.0%
- Burkholderiales 11.9%
- Vicinamibacterales 10.9%
- Hyphomicrobiales 7.4%
- Incertae Sedis 6.5%
- Chitinophagales 5.5%
- Gemmatimonadales 3.5%
- Terriglobales 2.9%
- everything else 51.3%
- Incertae Sedis 28.7%
- Chitinophagaceae 5.0%
- Xanthobacteraceae 4.7%
- Nitrosomonadaceae 4.6%
- Gemmatimonadaceae 3.5%
- SC-I-84 2.7%
- Comamonadaceae 2.5%
- everything else 48.2%
- Incertae Sedis 55.1%
- Ellin6067 3.2%
- Acidibacter 1.8%
- Gemmatimonas 1.6%
- Bradyrhizobium 1.5%
- Ferruginibacter 1.3%
- Candidatus Udaeobacter 1.1%
- everything else 34.4%
- uncultured bacterium 64.2%
- metagenome 5.9%
- uncultured Acidobacteria bacterium 4.7%
- uncultured soil bacterium 1.4%
- uncultured proteobacterium 1.4%
- Bradyrhizobium elkanii 1.1%
- uncultured Comamonadaceae bacterium 0.9%
- everything else 20.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.