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SAMD00160708
microbial community in surface soil collected at I-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
20,679
Reads
1,044
Observed features
6.559
Shannon
0.944
Evenness
1,044
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194889
Per-run QC
- 16S identity
- 82.2%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 144 (0.7%)
- ASV_33334 · Rhizobacter 95 (0.5%)
- ASV_34773 · Incertae Sedis 97 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 30.1%
- Acidobacteriota 18.4%
- Actinomycetota 11.8%
- Bacteroidota 10.1%
- Planctomycetota 6.5%
- Myxococcota 5.1%
- Gemmatimonadota 3.8%
- everything else 14.3%
- Gammaproteobacteria 17.1%
- Alphaproteobacteria 13.0%
- Vicinamibacteria 12.3%
- Bacteroidia 10.1%
- Actinobacteria 5.7%
- Planctomycetes 5.5%
- Polyangiia 4.0%
- everything else 32.3%
- Vicinamibacterales 11.7%
- Burkholderiales 11.2%
- Chitinophagales 7.6%
- Hyphomicrobiales 7.0%
- Incertae Sedis 5.2%
- Gemmatimonadales 3.6%
- Polyangiales 2.4%
- everything else 51.4%
- Incertae Sedis 24.4%
- Chitinophagaceae 7.0%
- Nitrosomonadaceae 4.6%
- Xanthobacteraceae 4.1%
- Gemmatimonadaceae 3.6%
- SC-I-84 2.5%
- Comamonadaceae 2.4%
- everything else 51.5%
- Incertae Sedis 51.6%
- Ellin6067 3.4%
- Acidibacter 2.2%
- Bradyrhizobium 1.5%
- Ferruginibacter 1.5%
- Gemmatimonas 1.5%
- Candidatus Udaeobacter 1.3%
- everything else 37.1%
- uncultured bacterium 64.0%
- metagenome 8.2%
- uncultured Acidobacteria bacterium 3.5%
- uncultured proteobacterium 1.4%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured soil bacterium 1.2%
- Bradyrhizobium elkanii 1.1%
- everything else 19.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.