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SAMD00160718
microbial community in surface soil collected at I-3 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
26,533
Reads
1,275
Observed features
6.729
Shannon
0.941
Evenness
1,275
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194899
Per-run QC
- 16S identity
- 81.4%
- Q30
- 91.7%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 32.8%
- Acidobacteriota 17.0%
- Bacteroidota 11.6%
- Actinomycetota 9.8%
- Planctomycetota 6.3%
- Myxococcota 4.6%
- Verrucomicrobiota 4.3%
- everything else 13.7%
- Gammaproteobacteria 20.0%
- Alphaproteobacteria 12.8%
- Bacteroidia 11.6%
- Vicinamibacteria 10.3%
- Planctomycetes 5.1%
- Actinobacteria 4.5%
- Verrucomicrobiia 4.3%
- everything else 31.5%
- Burkholderiales 13.7%
- Vicinamibacterales 9.5%
- Chitinophagales 7.8%
- Hyphomicrobiales 7.0%
- Incertae Sedis 6.3%
- Gemmatimonadales 2.9%
- Chthoniobacterales 2.6%
- everything else 50.1%
- Incertae Sedis 25.1%
- Chitinophagaceae 6.8%
- Nitrosomonadaceae 5.1%
- Xanthobacteraceae 4.3%
- Comamonadaceae 3.7%
- SC-I-84 3.1%
- Gemmatimonadaceae 2.9%
- everything else 49.1%
- Incertae Sedis 51.0%
- Ellin6067 3.8%
- Ferruginibacter 1.9%
- Gemmatimonas 1.7%
- Acidibacter 1.6%
- Rhizobacter 1.3%
- Bradyrhizobium 1.3%
- everything else 37.4%
- uncultured bacterium 65.5%
- metagenome 6.9%
- uncultured Acidobacteria bacterium 4.0%
- uncultured soil bacterium 1.2%
- uncultured Comamonadaceae bacterium 1.1%
- uncultured proteobacterium 1.0%
- uncultured Alphaproteobacteria bacterium 0.7%
- everything else 19.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.