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SAMD00160691
microbial community in rhizosphere soil collected at O-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
33,926
Reads
1,349
Observed features
6.712
Shannon
0.931
Evenness
1,349
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194872
Per-run QC
- 16S identity
- 84.0%
- Q30
- 92.5%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 23.6%
- Acidobacteriota 22.5%
- Bacteroidota 10.5%
- Actinomycetota 8.3%
- Planctomycetota 8.2%
- Verrucomicrobiota 5.9%
- Myxococcota 4.9%
- everything else 16.0%
- Vicinamibacteria 14.0%
- Gammaproteobacteria 13.6%
- Bacteroidia 10.5%
- Alphaproteobacteria 10.0%
- Verrucomicrobiia 5.9%
- Acidobacteriae 4.7%
- Gemmatimonadia 4.7%
- everything else 36.5%
- Vicinamibacterales 13.6%
- Burkholderiales 9.3%
- Chitinophagales 7.9%
- Incertae Sedis 7.3%
- Hyphomicrobiales 5.6%
- Gemmatimonadales 4.7%
- Chthoniobacterales 3.7%
- everything else 47.9%
- Incertae Sedis 28.5%
- Chitinophagaceae 7.2%
- Gemmatimonadaceae 4.7%
- Xanthobacteraceae 3.8%
- Nitrosomonadaceae 3.7%
- Chthoniobacteraceae 3.6%
- WD2101 soil group 3.5%
- everything else 45.1%
- Incertae Sedis 60.6%
- Candidatus Udaeobacter 2.9%
- Ellin6067 2.3%
- Gemmatimonas 1.8%
- Ferruginibacter 1.4%
- Bradyrhizobium 1.4%
- Rhizobacter 0.9%
- everything else 28.7%
- uncultured bacterium 64.3%
- metagenome 5.1%
- uncultured Acidobacteria bacterium 4.4%
- uncultured Gemmatimonadetes bacterium 1.3%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured proteobacterium 1.1%
- uncultured soil bacterium 1.1%
- everything else 21.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.