opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160692
microbial community in rhizosphere soil collected at O-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
25,423
Reads
1,148
Observed features
6.618
Shannon
0.939
Evenness
1,148
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194873
Per-run QC
- 16S identity
- 84.7%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 235 (0.9%)
- ASV_33334 · Rhizobacter 161 (0.6%)
- ASV_34773 · Incertae Sedis 111 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 21.2%
- Acidobacteriota 18.5%
- Actinomycetota 18.0%
- Planctomycetota 11.2%
- Chloroflexota 7.2%
- Bacteroidota 5.6%
- Verrucomicrobiota 5.6%
- everything else 12.8%
- Vicinamibacteria 12.2%
- Alphaproteobacteria 11.1%
- Gammaproteobacteria 10.1%
- Thermoleophilia 8.8%
- Planctomycetes 7.8%
- Actinobacteria 6.4%
- Bacteroidia 5.6%
- everything else 38.1%
- Vicinamibacterales 12.0%
- Incertae Sedis 7.8%
- Hyphomicrobiales 7.2%
- Burkholderiales 7.1%
- Gaiellales 4.4%
- Chitinophagales 4.4%
- Solirubrobacterales 4.3%
- everything else 52.8%
- Incertae Sedis 27.6%
- Xanthobacteraceae 5.5%
- Gemmatimonadaceae 4.3%
- Chitinophagaceae 4.1%
- Chthoniobacteraceae 3.9%
- Gemmataceae 3.5%
- WD2101 soil group 3.1%
- everything else 48.1%
- Incertae Sedis 57.9%
- Candidatus Udaeobacter 2.9%
- Bradyrhizobium 1.9%
- Gemmatimonas 1.8%
- Ellin6067 1.5%
- Acidiferrimicrobium 1.1%
- Gaiella 1.1%
- everything else 31.7%
- uncultured bacterium 64.5%
- uncultured Acidobacteria bacterium 5.2%
- metagenome 3.1%
- Bradyrhizobium elkanii 1.3%
- uncultured planctomycete 1.2%
- uncultured Verrucomicrobia bacterium 1.1%
- uncultured soil bacterium 1.1%
- everything else 22.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.