opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160751
microbial community in rhizosphere soil collected at M-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
23,967
Reads
1,154
Observed features
6.67
Shannon
0.946
Evenness
1,154
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194931
Per-run QC
- 16S identity
- 85.8%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 211 (0.9%)
- ASV_33334 · Rhizobacter 143 (0.6%)
- ASV_34773 · Incertae Sedis 112 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 26.7%
- Acidobacteriota 20.3%
- Actinomycetota 15.2%
- Planctomycetota 8.4%
- Verrucomicrobiota 5.1%
- Chloroflexota 4.7%
- Bacteroidota 4.1%
- everything else 15.6%
- Alphaproteobacteria 14.5%
- Gammaproteobacteria 12.2%
- Vicinamibacteria 11.8%
- Planctomycetes 7.3%
- Thermoleophilia 7.1%
- Verrucomicrobiia 5.1%
- Actinobacteria 5.0%
- everything else 37.0%
- Vicinamibacterales 10.9%
- Hyphomicrobiales 10.0%
- Incertae Sedis 9.8%
- Burkholderiales 8.6%
- Gaiellales 4.4%
- Gemmatales 3.7%
- Chthoniobacterales 3.6%
- everything else 48.9%
- Incertae Sedis 33.5%
- Xanthobacteraceae 6.3%
- Gemmataceae 3.7%
- Nitrosomonadaceae 3.2%
- Chthoniobacteraceae 3.2%
- Chitinophagaceae 2.9%
- Comamonadaceae 2.2%
- everything else 45.1%
- Incertae Sedis 59.0%
- Candidatus Udaeobacter 2.7%
- Bradyrhizobium 1.8%
- Ellin6067 1.5%
- Acidiferrimicrobium 1.1%
- Acidibacter 1.1%
- Gaiella 1.0%
- everything else 31.8%
- uncultured bacterium 66.1%
- uncultured Acidobacteria bacterium 5.5%
- metagenome 3.7%
- uncultured Verrucomicrobia bacterium 1.4%
- Bradyrhizobium elkanii 1.3%
- uncultured actinobacterium 1.1%
- uncultured Alphaproteobacteria bacterium 0.9%
- everything else 20.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.