opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160693
microbial community in rhizosphere soil collected at O-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
27,808
Reads
1,243
Observed features
6.673
Shannon
0.936
Evenness
1,243
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194874
Per-run QC
- 16S identity
- 83.0%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 285 (1.0%)
- ASV_33334 · Rhizobacter 244 (0.9%)
- ASV_34773 · Incertae Sedis 154 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 22.7%
- Actinomycetota 16.6%
- Acidobacteriota 16.5%
- Planctomycetota 11.8%
- Chloroflexota 7.6%
- Bacteroidota 7.0%
- Verrucomicrobiota 6.6%
- everything else 11.3%
- Gammaproteobacteria 11.8%
- Alphaproteobacteria 10.9%
- Vicinamibacteria 10.8%
- Planctomycetes 8.5%
- Thermoleophilia 8.4%
- Bacteroidia 7.0%
- Verrucomicrobiia 6.6%
- everything else 36.1%
- Vicinamibacterales 10.5%
- Burkholderiales 8.4%
- Incertae Sedis 8.4%
- Hyphomicrobiales 7.0%
- Chitinophagales 5.0%
- Chthoniobacterales 4.8%
- Gaiellales 4.2%
- everything else 51.8%
- Incertae Sedis 26.2%
- Xanthobacteraceae 5.3%
- Chthoniobacteraceae 4.8%
- Chitinophagaceae 4.5%
- Gemmataceae 4.1%
- Gemmatimonadaceae 3.1%
- WD2101 soil group 2.9%
- everything else 49.1%
- Incertae Sedis 56.0%
- Candidatus Udaeobacter 3.4%
- Bradyrhizobium 1.9%
- Ellin6067 1.6%
- Gemmatimonas 1.4%
- Chthoniobacter 1.3%
- Gaiella 1.1%
- everything else 33.2%
- uncultured bacterium 64.6%
- metagenome 4.5%
- uncultured Acidobacteria bacterium 3.9%
- uncultured Verrucomicrobia bacterium 1.8%
- Bradyrhizobium elkanii 1.4%
- uncultured Comamonadaceae bacterium 1.2%
- uncultured planctomycete 1.0%
- everything else 21.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.