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SAMD00160733
microbial community in rhizosphere soil collected at N-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,979
Reads
1,376
Observed features
6.829
Shannon
0.945
Evenness
1,376
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194914
Per-run QC
- 16S identity
- 81.3%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 29.7%
- Acidobacteriota 16.8%
- Actinomycetota 15.3%
- Planctomycetota 9.7%
- Bacteroidota 6.9%
- Verrucomicrobiota 5.2%
- Chloroflexota 4.3%
- everything else 12.3%
- Gammaproteobacteria 15.5%
- Alphaproteobacteria 14.2%
- Vicinamibacteria 9.5%
- Planctomycetes 8.0%
- Bacteroidia 6.9%
- Thermoleophilia 6.4%
- Actinobacteria 6.1%
- everything else 33.4%
- Burkholderiales 9.2%
- Hyphomicrobiales 8.8%
- Vicinamibacterales 8.6%
- Incertae Sedis 7.6%
- Gaiellales 4.3%
- Chitinophagales 4.0%
- Gemmatales 3.8%
- everything else 53.7%
- Incertae Sedis 27.8%
- Xanthobacteraceae 5.7%
- Gemmataceae 3.8%
- Chitinophagaceae 3.8%
- Chthoniobacteraceae 2.8%
- Nitrosomonadaceae 2.6%
- Comamonadaceae 2.0%
- everything else 51.6%
- Incertae Sedis 54.7%
- Bradyrhizobium 2.1%
- Candidatus Udaeobacter 1.9%
- Ellin6067 1.6%
- Acidibacter 1.4%
- Acidothermus 1.1%
- Chthoniobacter 0.9%
- everything else 36.3%
- uncultured bacterium 64.7%
- uncultured Acidobacteria bacterium 4.9%
- metagenome 3.5%
- Bradyrhizobium elkanii 1.8%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured proteobacterium 1.1%
- uncultured soil bacterium 1.0%
- everything else 21.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.