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SAMD00160719
microbial community in surface soil collected at I-3 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
25,276
Reads
1,272
Observed features
6.738
Shannon
0.943
Evenness
1,272
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194900
Per-run QC
- 16S identity
- 82.9%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 277 (1.1%)
- ASV_33334 · Rhizobacter 136 (0.5%)
- ASV_34773 · Incertae Sedis 159 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 28.9%
- Acidobacteriota 18.4%
- Actinomycetota 12.9%
- Planctomycetota 10.4%
- Bacteroidota 6.2%
- Chloroflexota 5.4%
- Verrucomicrobiota 5.0%
- everything else 12.8%
- Gammaproteobacteria 14.9%
- Alphaproteobacteria 14.0%
- Vicinamibacteria 12.3%
- Planctomycetes 9.0%
- Bacteroidia 6.2%
- Actinobacteria 5.6%
- Verrucomicrobiia 5.0%
- everything else 33.0%
- Vicinamibacterales 11.5%
- Burkholderiales 10.3%
- Hyphomicrobiales 9.2%
- Incertae Sedis 7.1%
- Chitinophagales 4.9%
- Gemmatales 4.0%
- Chthoniobacterales 3.8%
- everything else 49.3%
- Incertae Sedis 27.9%
- Xanthobacteraceae 6.2%
- Chitinophagaceae 4.2%
- Gemmataceae 4.0%
- Nitrosomonadaceae 3.9%
- Chthoniobacteraceae 3.4%
- SC-I-84 2.7%
- everything else 47.7%
- Incertae Sedis 53.5%
- Ellin6067 2.8%
- Bradyrhizobium 2.4%
- Candidatus Udaeobacter 1.8%
- Chthoniobacter 1.6%
- Gemmatimonas 1.3%
- Acidibacter 1.3%
- everything else 35.3%
- uncultured bacterium 65.3%
- metagenome 5.6%
- uncultured Acidobacteria bacterium 3.8%
- uncultured soil bacterium 1.8%
- Bradyrhizobium elkanii 1.7%
- uncultured Verrucomicrobia bacterium 1.3%
- uncultured planctomycete 1.0%
- everything else 19.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.