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SAMD00160694
microbial community in surface soil collected at O-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
33,902
Reads
1,379
Observed features
6.76
Shannon
0.935
Evenness
1,379
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194875
Per-run QC
- 16S identity
- 86.5%
- Q30
- 92.5%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 618 (1.8%)
- ASV_22223 · Candidatus Udaeobacter 460 (1.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 28.1%
- Actinomycetota 19.8%
- Acidobacteriota 13.3%
- Myxococcota 6.9%
- Planctomycetota 6.4%
- Bacteroidota 6.4%
- Verrucomicrobiota 5.4%
- everything else 13.7%
- Alphaproteobacteria 15.8%
- Gammaproteobacteria 12.2%
- Actinobacteria 8.7%
- Thermoleophilia 7.9%
- Bacteroidia 6.4%
- Acidobacteriae 5.7%
- Verrucomicrobiia 5.4%
- everything else 37.9%
- Hyphomicrobiales 10.2%
- Burkholderiales 8.0%
- Incertae Sedis 6.0%
- Vicinamibacterales 5.1%
- Gaiellales 4.7%
- Chitinophagales 4.0%
- Chthoniobacterales 3.9%
- everything else 58.2%
- Incertae Sedis 22.1%
- Xanthobacteraceae 7.0%
- Chitinophagaceae 3.8%
- Chthoniobacteraceae 3.5%
- Comamonadaceae 2.8%
- Gemmataceae 2.4%
- Solirubrobacteraceae 2.0%
- everything else 56.4%
- Incertae Sedis 49.1%
- Candidatus Udaeobacter 3.0%
- Bradyrhizobium 2.9%
- Acidothermus 1.5%
- Nocardioides 1.4%
- Candidatus Solibacter 1.3%
- Acidibacter 1.3%
- everything else 39.6%
- uncultured bacterium 66.2%
- metagenome 3.9%
- uncultured Acidobacteria bacterium 2.8%
- Bradyrhizobium elkanii 1.8%
- uncultured Comamonadaceae bacterium 1.2%
- uncultured Alphaproteobacteria bacterium 1.2%
- uncultured delta proteobacterium 0.8%
- everything else 22.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.