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SAMD00160701
microbial community in surface soil collected at O-3 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
36,647
Reads
1,304
Observed features
6.643
Shannon
0.926
Evenness
1,304
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194882
Per-run QC
- 16S identity
- 82.2%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 705 (1.9%)
- ASV_22223 · Candidatus Udaeobacter 918 (2.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 25.8%
- Actinomycetota 23.3%
- Acidobacteriota 13.4%
- Planctomycetota 9.3%
- Verrucomicrobiota 8.6%
- Chloroflexota 5.3%
- Bacteroidota 4.5%
- everything else 9.9%
- Alphaproteobacteria 15.6%
- Gammaproteobacteria 10.2%
- Thermoleophilia 10.0%
- Actinobacteria 9.3%
- Verrucomicrobiia 8.6%
- Planctomycetes 8.2%
- Vicinamibacteria 5.8%
- everything else 32.4%
- Hyphomicrobiales 9.6%
- Incertae Sedis 7.1%
- Chthoniobacterales 7.0%
- Gaiellales 6.0%
- Burkholderiales 5.9%
- Vicinamibacterales 5.6%
- Gemmatales 4.2%
- everything else 54.7%
- Incertae Sedis 25.5%
- Xanthobacteraceae 7.2%
- Chthoniobacteraceae 6.0%
- Gemmataceae 4.2%
- Chitinophagaceae 2.6%
- Comamonadaceae 2.3%
- Solirubrobacteraceae 2.0%
- everything else 50.2%
- Incertae Sedis 52.3%
- Candidatus Udaeobacter 5.4%
- Bradyrhizobium 2.7%
- Acidothermus 1.9%
- Nocardioides 1.4%
- Gaiella 1.3%
- Acidibacter 1.2%
- everything else 33.9%
- uncultured bacterium 67.7%
- metagenome 3.4%
- uncultured Acidobacteria bacterium 2.5%
- Bradyrhizobium elkanii 1.9%
- uncultured Comamonadaceae bacterium 1.3%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured planctomycete 1.0%
- everything else 20.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.