opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160695
microbial community in surface soil collected at O-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
37,703
Reads
1,483
Observed features
6.86
Shannon
0.94
Evenness
1,483
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194876
Per-run QC
- 16S identity
- 81.0%
- Q30
- 91.7%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_11112 · Bradyrhizobium 533 (1.4%)
- ASV_22223 · Candidatus Udaeobacter 465 (1.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 27.0%
- Actinomycetota 17.0%
- Acidobacteriota 15.2%
- Myxococcota 6.9%
- Planctomycetota 6.6%
- Bacteroidota 6.2%
- Verrucomicrobiota 5.5%
- everything else 15.6%
- Alphaproteobacteria 13.8%
- Gammaproteobacteria 13.2%
- Actinobacteria 7.3%
- Acidobacteriae 6.6%
- Thermoleophilia 6.5%
- Bacteroidia 6.2%
- Vicinamibacteria 5.9%
- everything else 40.6%
- Hyphomicrobiales 8.4%
- Burkholderiales 8.1%
- Incertae Sedis 6.8%
- Vicinamibacterales 5.5%
- Chitinophagales 4.1%
- Gaiellales 4.0%
- Chthoniobacterales 3.7%
- everything else 59.6%
- Incertae Sedis 23.7%
- Xanthobacteraceae 5.5%
- Chitinophagaceae 3.9%
- Chthoniobacteraceae 3.4%
- Gemmataceae 2.6%
- Comamonadaceae 2.5%
- Nitrosomonadaceae 2.2%
- everything else 56.2%
- Incertae Sedis 50.9%
- Candidatus Udaeobacter 3.0%
- Bradyrhizobium 2.2%
- Candidatus Solibacter 1.8%
- Ellin6067 1.5%
- Acidibacter 1.4%
- Nocardioides 1.3%
- everything else 37.9%
- uncultured bacterium 66.2%
- metagenome 3.4%
- uncultured Acidobacteria bacterium 2.8%
- Bradyrhizobium elkanii 1.4%
- uncultured Alphaproteobacteria bacterium 1.0%
- uncultured proteobacterium 1.0%
- uncultured delta proteobacterium 0.9%
- everything else 23.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.