opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160698
microbial community in rhizosphere soil collected at O-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
27,454
Reads
1,298
Observed features
6.706
Shannon
0.936
Evenness
1,298
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194879
Per-run QC
- 16S identity
- 80.4%
- Q30
- 91.8%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 439 (1.6%)
- ASV_33334 · Rhizobacter 166 (0.6%)
- ASV_34773 · Incertae Sedis 92 (0.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 25.9%
- Actinomycetota 17.1%
- Acidobacteriota 16.4%
- Planctomycetota 7.7%
- Verrucomicrobiota 7.1%
- Chloroflexota 5.8%
- Bacteroidota 5.5%
- everything else 14.5%
- Alphaproteobacteria 15.4%
- Gammaproteobacteria 10.6%
- Acidobacteriae 8.0%
- Thermoleophilia 7.4%
- Verrucomicrobiia 7.1%
- Actinobacteria 6.9%
- Planctomycetes 6.7%
- everything else 38.0%
- Hyphomicrobiales 10.3%
- Incertae Sedis 7.2%
- Burkholderiales 6.7%
- Vicinamibacterales 5.5%
- Gaiellales 4.9%
- Chthoniobacterales 4.8%
- Chitinophagales 4.0%
- everything else 56.6%
- Incertae Sedis 26.0%
- Xanthobacteraceae 7.2%
- Chthoniobacteraceae 4.4%
- Chitinophagaceae 3.8%
- Gemmataceae 3.3%
- Nitrosomonadaceae 2.2%
- Solibacteraceae 1.8%
- everything else 51.2%
- Incertae Sedis 53.1%
- Candidatus Udaeobacter 4.0%
- Bradyrhizobium 2.7%
- Candidatus Solibacter 1.8%
- Acidothermus 1.8%
- Ellin6067 1.4%
- Acidibacter 1.2%
- everything else 34.0%
- uncultured bacterium 67.0%
- uncultured Acidobacteria bacterium 3.8%
- metagenome 3.2%
- Bradyrhizobium elkanii 2.2%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured Comamonadaceae bacterium 0.9%
- everything else 20.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.