opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160696
microbial community in surface soil collected at O-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
35,484
Reads
1,394
Observed features
6.808
Shannon
0.94
Evenness
1,394
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194877
Per-run QC
- 16S identity
- 83.8%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_11112 · Bradyrhizobium 521 (1.5%)
- ASV_22223 · Candidatus Udaeobacter 336 (0.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 24.6%
- Actinomycetota 23.1%
- Acidobacteriota 12.8%
- Planctomycetota 8.6%
- Chloroflexota 6.2%
- Bacteroidota 5.9%
- Myxococcota 5.6%
- everything else 13.2%
- Alphaproteobacteria 13.0%
- Gammaproteobacteria 11.6%
- Actinobacteria 10.5%
- Thermoleophilia 8.7%
- Planctomycetes 7.3%
- Bacteroidia 5.9%
- Acidobacteriae 5.5%
- everything else 37.4%
- Hyphomicrobiales 8.3%
- Burkholderiales 7.4%
- Incertae Sedis 6.4%
- Gaiellales 5.3%
- Vicinamibacterales 4.9%
- Chitinophagales 3.9%
- Chthoniobacterales 3.5%
- everything else 60.2%
- Incertae Sedis 22.5%
- Xanthobacteraceae 5.5%
- Chitinophagaceae 3.7%
- Gemmataceae 3.2%
- Chthoniobacteraceae 3.1%
- Isosphaeraceae 2.8%
- Comamonadaceae 2.5%
- everything else 56.8%
- Incertae Sedis 48.7%
- Candidatus Udaeobacter 2.6%
- Bradyrhizobium 2.2%
- Nocardioides 2.0%
- Acidothermus 1.5%
- Candidatus Solibacter 1.5%
- Acidibacter 1.3%
- everything else 40.3%
- uncultured bacterium 66.0%
- metagenome 3.4%
- uncultured Acidobacteria bacterium 2.6%
- Bradyrhizobium elkanii 1.5%
- uncultured planctomycete 1.4%
- uncultured Comamonadaceae bacterium 1.1%
- uncultured Verrucomicrobia bacterium 0.9%
- everything else 23.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 92% similar (genus)
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.